View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11711_low_6 (Length: 407)
Name: NF11711_low_6
Description: NF11711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11711_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 21 - 365
Target Start/End: Original strand, 27328651 - 27328994
Alignment:
| Q |
21 |
cacataccaggcataacctagtttaagtagaacatgaatttggtgttgtaccnnnnnnnttaaaagaacatgaatttggtggtttgatattgagggacca |
120 |
Q |
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| T |
27328651 |
cacataccaggcataacctagtttaagtagaacatgaatttggtgttgtaccaaaaaaaa-aaaagaacatgaatttggtggtttgatattgagggacca |
27328749 |
T |
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| Q |
121 |
cctgctaaaacgcaggtgacataaaagcttgatccgatccaacatacttacatgcaaaattaggtcgtaaacaaataaatctcctggcctgtgtgacgtt |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27328750 |
cctgctaaaacgcaggtgacataaaagcttgatccgatccaacatacttacatgcaaaattaggtcgtaaacaaataaatctcctggcctgtgtgacgtt |
27328849 |
T |
|
| Q |
221 |
tcatcagctgtcacctgttctactatgacaccatcacattatttgcatgccactaaaatagcaccacaaattcatttggagtttgttgctctaagaaaaa |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
27328850 |
tcatcagctgtcacctgttctactatgacaccatcacattatttgcatgccactaaaatagcaccgcaaattcatttggagttggttgctctaagaaaaa |
27328949 |
T |
|
| Q |
321 |
ataaatgtattaaattaaagttagctcttgagcatattagtttga |
365 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27328950 |
ataaatgtattatattaaagttagctcttgagcatattagtttga |
27328994 |
T |
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