View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11711_low_7 (Length: 385)
Name: NF11711_low_7
Description: NF11711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11711_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 51499025 - 51498668
Alignment:
| Q |
1 |
ctcagattgtgatgttgggttggaaagtgcaagaatgagtggtttctagattacatgccaagaaatgtcacaagcattagagatataatcttcttatagt |
100 |
Q |
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| T |
51499025 |
ctcagattgtgatgttgggttggaaagtgcaagaatgagtggtttctagattacatggcaagaaatgtcacaaacattagagatataatcttcttatagt |
51498926 |
T |
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| Q |
101 |
gtagtaaaaattatttgagaagacatgaatgtacctcattcaaggatgccatggcttcaacaacttccttggtaaatgtctttcctactccagaggatcc |
200 |
Q |
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| T |
51498925 |
gtagtaaaaattatttgagaaaacatgaatgtacctcattcaaggatgccatggcttcaacaacttccttggtaaatgtctttcctactccagaggatcc |
51498826 |
T |
|
| Q |
201 |
aatcaaaacggttggcttgattgcctgatggaatgaattgtgaaatatggtgttttgttatatgaacgaagggtaacaaatatatttttgaattaaatca |
300 |
Q |
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| T |
51498825 |
aatcaaaacggttggcttgattgcctgatggaatgaattgtgaaatatggtgttttgttatatgaactaagggtaacaaatatatttttgaattaaatca |
51498726 |
T |
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| Q |
301 |
aaaagaattgagacactttactcaccttgacagcatttagaagctccttcacaggttc |
358 |
Q |
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| T |
51498725 |
aaaagaattgagacactttactcaccttgacagcatttagaagctccttcacaggttc |
51498668 |
T |
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