View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11712_low_1 (Length: 611)
Name: NF11712_low_1
Description: NF11712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11712_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 440; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 6 - 597
Target Start/End: Complemental strand, 38280750 - 38280162
Alignment:
| Q |
6 |
aaataaatgggtattttgtcttttgtatttannnnnnnnaaaacgatcgatgttaatattgttagtaattgtgtattatgtgagtggggatggaactctc |
105 |
Q |
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| T |
38280750 |
aaataaatgggtattttgtcttttgtatttatattttt-aaaacgatcgatgttaatattgttagtaattgtgtattatgtgagtggggatggaactctc |
38280652 |
T |
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| Q |
106 |
aatctcctcatcactcattttatgactctctcattcaaaccaccaaaccaaccttatatctcatatcttgtgtttatagtttatttataatacaattatt |
205 |
Q |
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| T |
38280651 |
aatctcctcatcacccattttatgagtctctcattcaagccaccaaaccaaccttatatctcatatcttgtgtttatagtttatttataatacaattatt |
38280552 |
T |
|
| Q |
206 |
tttgttttatgatttggcgatgagaaatatttaatatttgtgatgtcatttatttgtatgatgttttatccaacttacaagcaaataattgtgtgaactc |
305 |
Q |
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| T |
38280551 |
tttgttttatgatttggcgatgagaaatatttaatatttgtgatgtcatttatttgtatgatgttttatccaacttacaagcaaataattgtgtgaactc |
38280452 |
T |
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| Q |
306 |
tctacaactcttgatagaagatgggtaaaaattcatttactttgatgctggttcgaacctaaaaaatgttatttatctttcaattatgctaactaacagt |
405 |
Q |
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| T |
38280451 |
tctacaactcttgatagaagatgggtaaaaattc---------------------aacctaaaaaatgttatttatctttcaattatgctaactaacagt |
38280373 |
T |
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| Q |
406 |
aggctctctaaccctcttctaaatacacattttttg-------------------attgaacttgcttcctcacctcactattttaagagaagtgggtca |
486 |
Q |
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| T |
38280372 |
aggctctctaaccctcttctaaatacacattttttgattggttgagatgaaatatattgaacttgcttcctcacctcactattttaagagaagtgggtca |
38280273 |
T |
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| Q |
487 |
cagcactttcatgaccacactatcatcaaagatccaatcactctttaaatcaactattgaaggctaaaatggaagaggcagcaaagttcaaagtataagt |
586 |
Q |
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| T |
38280272 |
cagcactttcatgaccacactatcatcaaagatccaatcactctttaaatcaactattgaaggctaaaatggaagaggcagcaaagttcaaagtataagt |
38280173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 256 - 313
Target Start/End: Complemental strand, 13820317 - 13820260
Alignment:
| Q |
256 |
tatttgtatgatgttttatccaacttacaagcaaataattgtgtgaactctctacaac |
313 |
Q |
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| T |
13820317 |
tatttgtatgatattttgtccaacttacaagcacatgattctgtgagctctctacaac |
13820260 |
T |
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