View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11712_low_4 (Length: 362)

Name: NF11712_low_4
Description: NF11712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11712_low_4
NF11712_low_4
[»] chr4 (28 HSPs)
chr4 (1-346)||(51701036-51701381)
chr4 (150-279)||(16899054-16899182)
chr4 (150-279)||(18347569-18347697)
chr4 (61-126)||(3947760-3947825)
chr4 (46-107)||(4383386-4383447)
chr4 (69-131)||(2361977-2362039)
chr4 (69-126)||(21945503-21945560)
chr4 (74-131)||(31800485-31800542)
chr4 (75-139)||(37203251-37203315)
chr4 (46-117)||(27706156-27706227)
chr4 (67-117)||(29205453-29205503)
chr4 (69-126)||(23292988-23293045)
chr4 (69-126)||(28964250-28964307)
chr4 (69-126)||(38847014-38847071)
chr4 (69-117)||(6485613-6485661)
chr4 (61-142)||(12895110-12895193)
chr4 (42-106)||(37496724-37496788)
chr4 (75-117)||(11596360-11596402)
chr4 (69-126)||(30298946-30299004)
chr4 (69-126)||(30327814-30327872)
chr4 (75-131)||(715615-715672)
chr4 (75-131)||(752941-752998)
chr4 (59-108)||(28084540-28084589)
chr4 (66-111)||(47492394-47492439)
chr4 (42-87)||(53490739-53490784)
chr4 (49-117)||(847960-848028)
chr4 (46-126)||(19482668-19482748)
chr4 (46-106)||(30982857-30982917)
[»] chr3 (34 HSPs)
chr3 (150-279)||(13236794-13236922)
chr3 (46-126)||(14209113-14209193)
chr3 (57-132)||(1509533-1509608)
chr3 (1-126)||(4987224-4987350)
chr3 (46-148)||(14832074-14832179)
chr3 (63-126)||(27505246-27505309)
chr3 (1-126)||(34185056-34185182)
chr3 (56-126)||(55212963-55213032)
chr3 (69-126)||(10268488-10268545)
chr3 (46-126)||(14216892-14216972)
chr3 (46-126)||(14223021-14223101)
chr3 (74-126)||(26508110-26508162)
chr3 (46-126)||(34910317-34910397)
chr3 (67-126)||(20503465-20503524)
chr3 (42-140)||(28812499-28812599)
chr3 (69-126)||(28918001-28918058)
chr3 (61-126)||(49651780-49651845)
chr3 (69-126)||(55401075-55401132)
chr3 (46-126)||(15796273-15796353)
chr3 (74-126)||(21256993-21257045)
chr3 (42-126)||(21479118-21479197)
chr3 (42-117)||(8039810-8039885)
chr3 (46-117)||(41961629-41961700)
chr3 (69-115)||(8587023-8587069)
chr3 (1-117)||(11665953-11666070)
chr3 (49-126)||(14829690-14829766)
chr3 (46-126)||(750597-750677)
chr3 (61-101)||(3185242-3185282)
chr3 (74-106)||(4990974-4991006)
chr3 (73-117)||(11610530-11610574)
chr3 (70-106)||(12083923-12083959)
chr3 (63-126)||(14747561-14747625)
chr3 (42-117)||(17568659-17568733)
chr3 (74-126)||(35994745-35994796)
[»] chr1 (44 HSPs)
chr1 (1-117)||(47989506-47989623)
chr1 (49-117)||(6612153-6612221)
chr1 (1-108)||(31694643-31694751)
chr1 (69-149)||(18337301-18337386)
chr1 (67-131)||(21378573-21378637)
chr1 (42-108)||(30173737-30173803)
chr1 (58-131)||(17754306-17754379)
chr1 (69-126)||(22515889-22515946)
chr1 (47-116)||(25361896-25361965)
chr1 (62-126)||(113299-113363)
chr1 (74-126)||(18190115-18190167)
chr1 (1-126)||(40917751-40917875)
chr1 (63-126)||(24577182-24577245)
chr1 (46-117)||(32461443-32461513)
chr1 (45-116)||(44482240-44482311)
chr1 (74-125)||(48450594-48450645)
chr1 (42-112)||(34315726-34315796)
chr1 (54-131)||(6332666-6332742)
chr1 (50-107)||(15449215-15449272)
chr1 (69-126)||(19058858-19058915)
chr1 (48-117)||(21038092-21038161)
chr1 (69-126)||(22881618-22881675)
chr1 (219-276)||(33420537-33420594)
chr1 (69-126)||(38078663-38078720)
chr1 (69-126)||(41877472-41877529)
chr1 (69-126)||(46348385-46348442)
chr1 (63-131)||(1704988-1705056)
chr1 (69-113)||(1815270-1815314)
chr1 (42-126)||(9629875-9629959)
chr1 (56-126)||(17778549-17778616)
chr1 (69-117)||(40258935-40258983)
chr1 (58-117)||(8010278-8010337)
chr1 (74-125)||(31015044-31015095)
chr1 (46-108)||(6427482-6427544)
chr1 (77-131)||(31672905-31672959)
chr1 (71-117)||(37055860-37055906)
chr1 (69-126)||(35702590-35702647)
chr1 (69-126)||(42359451-42359508)
chr1 (69-117)||(5927342-5927390)
chr1 (75-126)||(13011223-13011275)
chr1 (74-126)||(14359529-14359580)
chr1 (46-126)||(28273067-28273147)
chr1 (74-126)||(29144365-29144417)
chr1 (62-126)||(32434711-32434775)
[»] chr5 (27 HSPs)
chr5 (47-126)||(39698541-39698620)
chr5 (46-126)||(21522750-21522830)
chr5 (46-126)||(21533316-21533396)
chr5 (46-126)||(21542030-21542110)
chr5 (5-126)||(19579701-19579823)
chr5 (42-126)||(7677705-7677789)
chr5 (49-131)||(37328826-37328908)
chr5 (69-126)||(21191058-21191115)
chr5 (61-126)||(43001800-43001865)
chr5 (74-126)||(14674269-14674321)
chr5 (58-126)||(41633735-41633803)
chr5 (74-125)||(21576752-21576803)
chr5 (1-106)||(18592093-18592199)
chr5 (69-131)||(42893355-42893417)
chr5 (61-142)||(5894827-5894908)
chr5 (69-126)||(6247622-6247679)
chr5 (61-126)||(31084323-31084388)
chr5 (69-126)||(33178025-33178082)
chr5 (56-108)||(17088303-17088355)
chr5 (72-115)||(6326302-6326345)
chr5 (74-117)||(24906308-24906351)
chr5 (69-126)||(15883987-15884045)
chr5 (57-131)||(21351895-21351969)
chr5 (69-126)||(8420027-8420084)
chr5 (74-126)||(7218274-7218326)
chr5 (46-126)||(21814261-21814341)
chr5 (82-126)||(22013414-22013458)
[»] scaffold0136 (1 HSPs)
scaffold0136 (1-117)||(3782-3899)
[»] chr7 (33 HSPs)
chr7 (46-126)||(24339642-24339722)
chr7 (1-126)||(7438706-7438832)
chr7 (61-126)||(13770691-13770756)
chr7 (57-132)||(26033451-26033526)
chr7 (42-108)||(2334268-2334333)
chr7 (43-117)||(15902831-15902905)
chr7 (42-108)||(21560521-21560587)
chr7 (50-134)||(8160408-8160492)
chr7 (57-117)||(9408324-9408384)
chr7 (46-126)||(11665419-11665499)
chr7 (42-126)||(32308120-32308204)
chr7 (46-117)||(6028634-6028705)
chr7 (61-132)||(9778494-9778565)
chr7 (75-126)||(25481902-25481953)
chr7 (61-123)||(5409830-5409892)
chr7 (69-131)||(11061078-11061140)
chr7 (63-117)||(18013070-18013124)
chr7 (58-108)||(18039017-18039067)
chr7 (63-117)||(27945050-27945104)
chr7 (50-116)||(11272569-11272637)
chr7 (49-117)||(13300419-13300487)
chr7 (69-117)||(21880161-21880209)
chr7 (74-126)||(24105678-24105730)
chr7 (47-126)||(11831432-11831511)
chr7 (63-118)||(12843171-12843226)
chr7 (69-132)||(19213797-19213860)
chr7 (69-131)||(3991319-3991381)
chr7 (69-126)||(28155570-28155627)
chr7 (51-111)||(8056929-8056989)
chr7 (42-78)||(9933321-9933357)
chr7 (74-131)||(21864801-21864860)
chr7 (46-126)||(25822655-25822735)
chr7 (68-108)||(46550792-46550832)
[»] chr6 (36 HSPs)
chr6 (46-126)||(17435199-17435279)
chr6 (61-126)||(12696324-12696389)
chr6 (46-126)||(16766697-16766777)
chr6 (56-117)||(9522900-9522961)
chr6 (51-126)||(9107354-9107429)
chr6 (44-126)||(5970085-5970167)
chr6 (69-126)||(7977832-7977889)
chr6 (1-117)||(31384929-31385045)
chr6 (46-126)||(8365498-8365578)
chr6 (44-108)||(8713998-8714062)
chr6 (46-117)||(25038050-25038121)
chr6 (69-132)||(28715289-28715352)
chr6 (63-117)||(10770670-10770724)
chr6 (76-126)||(17841598-17841648)
chr6 (69-126)||(34595134-34595191)
chr6 (69-117)||(6898283-6898331)
chr6 (42-106)||(26562709-26562773)
chr6 (74-117)||(6327525-6327568)
chr6 (64-115)||(7973665-7973716)
chr6 (63-125)||(9911524-9911587)
chr6 (51-117)||(4118317-4118383)
chr6 (42-115)||(10339100-10339174)
chr6 (68-126)||(16833308-16833366)
chr6 (51-101)||(21395292-21395342)
chr6 (74-124)||(31959161-31959211)
chr6 (69-126)||(426516-426573)
chr6 (69-126)||(853861-853918)
chr6 (69-126)||(7801158-7801215)
chr6 (69-126)||(15489734-15489791)
chr6 (56-105)||(16111746-16111795)
chr6 (52-100)||(785440-785488)
chr6 (74-126)||(1191707-1191759)
chr6 (74-126)||(1681758-1681810)
chr6 (46-126)||(16488569-16488649)
chr6 (42-126)||(18367836-18367920)
chr6 (41-89)||(22745994-22746042)
[»] scaffold1079 (1 HSPs)
scaffold1079 (150-279)||(26-154)
[»] scaffold0223 (1 HSPs)
scaffold0223 (59-126)||(20172-20239)
[»] chr8 (26 HSPs)
chr8 (1-126)||(22651976-22652102)
chr8 (46-126)||(2572035-2572115)
chr8 (1-139)||(21465399-21465538)
chr8 (57-132)||(25566835-25566910)
chr8 (1-126)||(29510237-29510363)
chr8 (69-131)||(8343311-8343373)
chr8 (69-139)||(40332178-40332248)
chr8 (69-125)||(22197744-22197800)
chr8 (47-106)||(27067280-27067337)
chr8 (69-132)||(8342966-8343029)
chr8 (55-126)||(13436952-13437023)
chr8 (75-126)||(22595994-22596045)
chr8 (75-126)||(44694791-44694842)
chr8 (51-117)||(7442854-7442920)
chr8 (69-117)||(4948661-4948709)
chr8 (74-126)||(18407719-18407771)
chr8 (69-117)||(20873078-20873126)
chr8 (5-72)||(24205756-24205824)
chr8 (47-126)||(29447090-29447169)
chr8 (63-126)||(30271287-30271350)
chr8 (69-131)||(24613516-24613577)
chr8 (46-108)||(24727731-24727793)
chr8 (69-126)||(4298888-4298945)
chr8 (69-122)||(30077389-30077442)
chr8 (69-105)||(24669454-24669490)
chr8 (46-126)||(28745498-28745578)
[»] scaffold0004 (1 HSPs)
scaffold0004 (1-126)||(92807-92937)
[»] scaffold0086 (1 HSPs)
scaffold0086 (3-108)||(2946-3052)
[»] chr2 (26 HSPs)
chr2 (1-126)||(11223797-11223922)
chr2 (73-126)||(21374705-21374758)
chr2 (74-126)||(6940255-6940307)
chr2 (46-126)||(30717509-30717589)
chr2 (1-117)||(37419752-37419869)
chr2 (69-126)||(2438721-2438778)
chr2 (69-126)||(18841015-18841072)
chr2 (1-132)||(44860314-44860446)
chr2 (42-126)||(36756319-36756403)
chr2 (69-126)||(21624266-21624324)
chr2 (153-227)||(23053503-23053576)
chr2 (43-96)||(19614213-19614266)
chr2 (69-126)||(20539676-20539733)
chr2 (73-126)||(39323264-39323317)
chr2 (69-117)||(15972882-15972930)
chr2 (42-113)||(4882671-4882742)
chr2 (74-117)||(30404857-30404900)
chr2 (62-113)||(33153437-33153488)
chr2 (69-131)||(21091718-21091780)
chr2 (58-108)||(23058433-23058483)
chr2 (69-126)||(30335417-30335474)
chr2 (69-126)||(37558977-37559034)
chr2 (46-117)||(2665869-2665938)
chr2 (69-117)||(18421972-18422020)
chr2 (67-131)||(31808072-31808136)
chr2 (46-98)||(35056896-35056948)
[»] scaffold0057 (1 HSPs)
scaffold0057 (38-131)||(24020-24112)
[»] scaffold1528 (1 HSPs)
scaffold1528 (58-131)||(1030-1103)
[»] scaffold0722 (1 HSPs)
scaffold0722 (75-126)||(7040-7091)
[»] scaffold0171 (1 HSPs)
scaffold0171 (49-108)||(23529-23588)
[»] scaffold0103 (1 HSPs)
scaffold0103 (75-126)||(51811-51862)
[»] scaffold0019 (1 HSPs)
scaffold0019 (46-126)||(71723-71805)
[»] scaffold0008 (1 HSPs)
scaffold0008 (46-117)||(263351-263422)
[»] scaffold0044 (1 HSPs)
scaffold0044 (46-120)||(53186-53260)
[»] scaffold0036 (1 HSPs)
scaffold0036 (1-117)||(9680-9797)
[»] scaffold0011 (1 HSPs)
scaffold0011 (69-126)||(17751-17808)
[»] scaffold0066 (1 HSPs)
scaffold0066 (79-126)||(33375-33422)
[»] scaffold0361 (1 HSPs)
scaffold0361 (76-126)||(14530-14580)
[»] scaffold0018 (1 HSPs)
scaffold0018 (69-126)||(178820-178878)
[»] scaffold0793 (1 HSPs)
scaffold0793 (75-131)||(4891-4948)
[»] scaffold0652 (1 HSPs)
scaffold0652 (69-126)||(464-521)
[»] scaffold0053 (1 HSPs)
scaffold0053 (69-126)||(8798-8855)
[»] scaffold0027 (1 HSPs)
scaffold0027 (69-126)||(46682-46739)
[»] scaffold1300 (1 HSPs)
scaffold1300 (51-115)||(586-650)
[»] scaffold0049 (1 HSPs)
scaffold0049 (69-117)||(63782-63830)
[»] scaffold0025 (1 HSPs)
scaffold0025 (64-108)||(23788-23832)
[»] scaffold0021 (1 HSPs)
scaffold0021 (74-126)||(130482-130534)


Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 51701381 - 51701036
Alignment:
Q  1 gaagcacggacactcctcgaattaagcgtgttccgatggacacatgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgt 100  Q
    ||||||||||| ||||||| |||||||||||| ||||||| ||  |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  51701381 gaagcacggacgctcctcggattaagcgtgtttcgatggatac--gtgtcgtgttcgacaccgacacgacactaacacttgtaattacactcaattatgt 51701284  T
Q  101 aattttttaaaattattggctgtgtccgtgtcgtatccgtgtttcatagccgcagggcatagaggggggagatcataagtgtctatactgtaaaattgat 200  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  51701283 aattttttcaaattattagctgtgtccgtgtcgtatccgtgtttcatagctgcagggcatagaggggggagatcataagtgtctatactgtaaaattgat 51701184  T
Q  201 tttcgtaggaatgaaatagacatatatgatcaaaccgtaactaacga----atacgaccttaattgaaatgcacacatttgtcctaaaaatctatttgta 296  Q
    ||||||| |||||||||||||||||||| ||||| ||||||||||||    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  51701183 tttcgtaagaatgaaatagacatatatggtcaaaacgtaactaacgaatatatacgaccctaattgaaatgcacacatttgtcctaaaaatctatttgta 51701084  T
Q  297 gttctaacatcttctaatgaaaattgttacgtaatttattaagagcaaaa 346  Q
    ||||||| |||||||||||  |||||||||||||||||||||||||||||    
T  51701083 gttctaatatcttctaatg--aattgttacgtaatttattaagagcaaaa 51701036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 150 - 279
Target Start/End: Complemental strand, 16899182 - 16899054
Alignment:
Q  150 ccgcagggcatagaggggggagatcataagtgtctatactgtaaaattgattttcgtaggaatgaaatagacatatatgatcaaaccgtaactaacgaat 249  Q
    ||||||||||||||||||| || ||||||| |||||||| ||||||||||||||||  | ||||||| ||||||||||| || || |||||||| |||||    
T  16899182 ccgcagggcatagaggggg-aggtcataagcgtctataccgtaaaattgattttcgacgtaatgaaaaagacatatatggtcgaatcgtaactatcgaat 16899084  T
Q  250 acgaccttaattgaaatgcacacatttgtc 279  Q
    |||||| |||| ||||||||||||||||||    
T  16899083 acgaccctaatagaaatgcacacatttgtc 16899054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 150 - 279
Target Start/End: Complemental strand, 18347697 - 18347569
Alignment:
Q  150 ccgcagggcatagaggggggagatcataagtgtctatactgtaaaattgattttcgtaggaatgaaatagacatatatgatcaaaccgtaactaacgaat 249  Q
    ||||||||||||||||||| || ||||||| |||||||| ||||||||||||||||  | ||||||| ||||||||||| || || |||||||| |||||    
T  18347697 ccgcagggcatagaggggg-aggtcataagcgtctataccgtaaaattgattttcgacgtaatgaaaaagacatatatggtcgaatcgtaactatcgaat 18347599  T
Q  250 acgaccttaattgaaatgcacacatttgtc 279  Q
    |||||| |||| ||||||||||||||||||    
T  18347598 acgaccctaatagaaatgcacacatttgtc 18347569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 61 - 126
Target Start/End: Original strand, 3947760 - 3947825
Alignment:
Q  61 ccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||| ||||||||||||||||||||||| |||||||  ||||||| |||||||| ||||||||    
T  3947760 ccgacacgacactgacacttgtaattacactgaattatgcgattttttcaaattattagctgtgtc 3947825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 4383447 - 4383386
Alignment:
Q  46 gtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttt 107  Q
    |||||||||| ||||||||||| ||||||||| ||||||||||||| |||||||| ||||||    
T  4383447 gtgtcgtgtttgacaccgacacgacactgacatttgtaattacactgaattatgtgattttt 4383386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 69 - 131
Target Start/End: Original strand, 2361977 - 2362039
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtccgtgt 131  Q
    |||| ||||||| |||||||||| |||||||||||||||| |||||||| |||||||| ||||    
T  2361977 acaccgacacttttaattacactaaattatgtaattttttcaaattattagctgtgtcggtgt 2362039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 21945560 - 21945503
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||| |||||||||||||||||| |||||||| ||||||| |||||||| ||||||||    
T  21945560 acaccgacacttgtaattacactgaattatgtcattttttcaaattattagctgtgtc 21945503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 31800485 - 31800542
Alignment:
Q  74 gacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtccgtgt 131  Q
    |||||||||||||||| | |||||| |||||||||||||||||| |||||||| ||||    
T  31800485 gacacttgtaattacattaaattatttaattttttaaaattattagctgtgtcggtgt 31800542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 37203315 - 37203251
Alignment:
Q  75 acacttgtaattacactcaattatgtaattttttaaaattattggctgtgtccgtgtcgtatccg 139  Q
    ||||||||||||||||| |||||||| ||||||| |||||||| || ||||| ||||||| ||||    
T  37203315 acacttgtaattacactaaattatgtcattttttcaaattattagccgtgtctgtgtcgtgtccg 37203251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 117
Target Start/End: Original strand, 27706156 - 27706227
Alignment:
Q  46 gtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattatt 117  Q
    ||||||||| |||||   |||| ||||| ||||||||||||||||| |||||||| ||||||| ||||||||    
T  27706156 gtgtcgtgtccgacattaacacgacactcacacttgtaattacactaaattatgtgatttttttaaattatt 27706227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 117
Target Start/End: Complemental strand, 29205503 - 29205453
Alignment:
Q  67 caacactgacacttgtaattacactcaattatgtaattttttaaaattatt 117  Q
    |||||| |||||||||||||||||| |||||||| ||||||| ||||||||    
T  29205503 caacaccgacacttgtaattacactgaattatgtgattttttcaaattatt 29205453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 23292988 - 23293045
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||| |||||||||||||| ||| |||||||| ||||||| |||||||| ||||||||    
T  23292988 acaccgacacttgtaattatactgaattatgtgattttttcaaattattagctgtgtc 23293045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 28964250 - 28964307
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||| |||||||||||||||||| |||||||| ||||||| |||||||| ||| ||||    
T  28964250 acacagacacttgtaattacactgaattatgtgattttttcaaattattagctatgtc 28964307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 38847014 - 38847071
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||||||||||||||||||| ||| || | ||||||| |||||||| ||||||||    
T  38847014 acactgacacttgtaattacactgaataatatgattttttcaaattattagctgtgtc 38847071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 6485613 - 6485661
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattatt 117  Q
    |||| |||||||||||||||||| |||||||| ||||||| ||||||||    
T  6485613 acaccgacacttgtaattacactaaattatgtgattttttcaaattatt 6485661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 142
Target Start/End: Original strand, 12895110 - 12895193
Alignment:
Q  61 ccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc--cgtgtcgtatccgtgt 142  Q
    ||||||| |||| |||||||||||||||  | |||||||| ||||||| |||||||| ||||| ||  |||||||| |||||||    
T  12895110 ccgacacgacaccgacacttgtaattactttgaattatgtgattttttcaaattattagctgtttcggcgtgtcgtgtccgtgt 12895193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 37496788 - 37496724
Alignment:
Q  42 acatgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaatttt 106  Q
    ||||||||||||| || || ||||||||||| ||||||||| |||||| | |||||||| |||||    
T  37496788 acatgtgtcgtgtccggcaacgacacaacaccgacacttgtgattacattgaattatgtcatttt 37496724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 11596360 - 11596402
Alignment:
Q  75 acacttgtaattacactcaattatgtaattttttaaaattatt 117  Q
    ||||||||||||||||| |||||||| ||||||| ||||||||    
T  11596360 acacttgtaattacactgaattatgtgattttttcaaattatt 11596402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 30299004 - 30298946
Alignment:
Q  69 acactgacacttgtaattacactcaattatgt-aattttttaaaattattggctgtgtc 126  Q
    |||| |||||||||||||||||| |||||||| | |||||| |||||||| ||||||||    
T  30299004 acaccgacacttgtaattacactgaattatgtcatttttttcaaattattagctgtgtc 30298946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 30327872 - 30327814
Alignment:
Q  69 acactgacacttgtaattacactcaattatgt-aattttttaaaattattggctgtgtc 126  Q
    |||| |||||||||||||||||| |||||||| | |||||| |||||||| ||||||||    
T  30327872 acaccgacacttgtaattacactgaattatgtcatttttttcaaattattagctgtgtc 30327814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 715615 - 715672
Alignment:
Q  75 acacttgtaattacactcaattatgt-aattttttaaaattattggctgtgtccgtgt 131  Q
    ||||||||||||||||| |||||||| | |||||| |||||||| |||||||| ||||    
T  715615 acacttgtaattacactgaattatgtgattttttttaaattattagctgtgtcggtgt 715672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 752941 - 752998
Alignment:
Q  75 acacttgtaattacactcaattatgt-aattttttaaaattattggctgtgtccgtgt 131  Q
    ||||||||||||||||| |||||||| | |||||| |||||||| |||||||| ||||    
T  752941 acacttgtaattacactgaattatgtgattttttttaaattattagctgtgtcggtgt 752998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 28084589 - 28084540
Alignment:
Q  59 caccgacacaacactgacacttgtaattacactcaattatgtaatttttt 108  Q
    ||||||||| |||| |||||||||||||||| | |||||||| |||||||    
T  28084589 caccgacacgacacagacacttgtaattacattgaattatgtgatttttt 28084540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 47492439 - 47492394
Alignment:
Q  66 acaacactgacacttgtaattacactcaattatgtaattttttaaa 111  Q
    ||||||||||||||||| |||||| | |||||||| ||||||||||    
T  47492439 acaacactgacacttgtgattacattaaattatgtcattttttaaa 47492394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 53490739 - 53490784
Alignment:
Q  42 acatgtgtcgtgttcgacaccgacacaacactgacacttgtaatta 87  Q
    |||| |||||||| |||||||||||| | |||||||||||||||||    
T  53490739 acatttgtcgtgtccgacaccgacacgatactgacacttgtaatta 53490784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 848028 - 847960
Alignment:
Q  49 tcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattatt 117  Q
    |||||| ||||||| |||  |||| |||||||||||||| | | |||||||||||||| | ||||||||    
T  848028 tcgtgtccgacaccaacaagacaccgacacttgtaattatagtgaattatgtaattttctcaaattatt 847960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 19482748 - 19482668
Alignment:
Q  46 gtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||||| | | |||||||| ||||  ||||||||||||||||  |||||||| || |||| |||||||| | ||||||    
T  19482748 gtgtcgtgtccaataccgacacgacaccaacacttgtaattacaccgaattatgtgatattttcaaattattagttgtgtc 19482668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 30982857 - 30982917
Alignment:
Q  46 gtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaatttt 106  Q
    |||||||||  ||||||||||| |||| ||||||| |||||||||| || ||||| |||||    
T  30982857 gtgtcgtgtctgacaccgacacgacaccgacacttataattacactgaaatatgtgatttt 30982917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 150 - 279
Target Start/End: Original strand, 13236794 - 13236922
Alignment:
Q  150 ccgcagggcatagaggggggagatcataagtgtctatactgtaaaattgattttcgtaggaatgaaatagacatatatgatcaaaccgtaactaacgaat 249  Q
    ||||||||||||||||||| || ||||||| |||||||| ||||||||||||||||  | ||||||| ||||||||||| || || |||||||| |||||    
T  13236794 ccgcagggcatagaggggg-aggtcataagcgtctataccgtaaaattgattttcgacgtaatgaaaaagacatatatggtcgaatcgtaactatcgaat 13236892  T
Q  250 acgaccttaattgaaatgcacacatttgtc 279  Q
    |||||| |||| ||||||||||||||||||    
T  13236893 acgaccctaatagaaatgcacacatttgtc 13236922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 14209193 - 14209113
Alignment:
Q  46 gtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||| | ||||||    
T  14209193 gtgtcgtgtccgacaccgacacgacactgacacttgtaattacactgaattatgtgattttttaaaattattagttgtgtc 14209113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 57 - 132
Target Start/End: Complemental strand, 1509608 - 1509533
Alignment:
Q  57 gacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtccgtgtc 132  Q
    |||||||| || |||| |||||||||||||||||| |||||||| ||||||| |||||||| |||||||| |||||    
T  1509608 gacaccgaaacgacaccgacacttgtaattacactaaattatgtgattttttcaaattattagctgtgtcagtgtc 1509533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 4987224 - 4987350
Alignment:
Q  1 gaagcacggacactcctcgaattaagcgtgttccgatg---gacacatgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaatta 97  Q
    |||| |||||||||||||| |||| |||||| ||| ||   |||||  ||||||||| | ||||||||||  |||  ||||||||||||||||| |||||    
T  4987224 gaagtacggacactcctcggattaggcgtgtcccggtgtcggacac--gtgtcgtgtccaacaccgacacgtcaccaacacttgtaattacactgaatta 4987321  T
Q  98 tgtaattttttaaaattattggctgtgtc 126  Q
    ||| ||||||| |||||||| ||||||||    
T  4987322 tgtgattttttcaaattattagctgtgtc 4987350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 148
Target Start/End: Complemental strand, 14832179 - 14832074
Alignment:
Q  46 gtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc--cgtgt-cgtatccgtgt 142  Q
    ||||||||| ||| |||||||| ||||||||||||||||||||| | | |||||| ||||||| |||||||| ||||| ||  ||||| ||||||||||     
T  14832179 gtgtcgtgtccgataccgacacgacactgacacttgtaattacattgagttatgtgattttttcaaattattagctgtatcggcgtgtccgtatccgtgc 14832080  T
Q  143 ttcata 148  Q
    ||||||    
T  14832079 ttcata 14832074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 126
Target Start/End: Complemental strand, 27505309 - 27505246
Alignment:
Q  63 gacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||| |||| |||||||||||||||||| |||||||| |||||| ||||||||| ||||||||    
T  27505309 gacacgacaccgacacttgtaattacacttaattatgtgatttttaaaaattattagctgtgtc 27505246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 34185056 - 34185182
Alignment:
Q  1 gaagcacggacactcctcgaattaagcgtgttccgatg---gacacatgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaatta 97  Q
    ||||||||||||||||||| |||| |||||| ||| ||   ||||||||| |  ||| |||||  ||||| |||| |||||||||||||||||| ||||     
T  34185056 gaagcacggacactcctcggattaggcgtgtcccggtgtcggacacatgtct--tgtccgacatggacacgacaccgacacttgtaattacactgaattg 34185153  T
Q  98 tgtaattttttaaaattattggctgtgtc 126  Q
    ||| ||||||| |||||||| || |||||    
T  34185154 tgtgattttttgaaattattagccgtgtc 34185182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 126
Target Start/End: Complemental strand, 55213032 - 55212963
Alignment:
Q  56 cgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||||||||| ||| ||||||||||||| |||| |||||||| ||||||||||||||||  |||||||    
T  55213032 cgacaccgacaca-caccgacacttgtaattgcactaaattatgtgattttttaaaattattaactgtgtc 55212963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 10268488 - 10268545
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||||||||||||||||||| |||||||| ||||||| ||||||||  |||||||    
T  10268488 acactgacacttgtaattacactaaattatgtgattttttcaaattattaactgtgtc 10268545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 14216972 - 14216892
Alignment:
Q  46 gtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||||| ||||||  |||| |||| |||||||||||||||||| |||||| | || ||||||||||||| | ||||||    
T  14216972 gtgtcgtgtccgacactaacacgacacggacacttgtaattacactgaattatatgatattttaaaattattagttgtgtc 14216892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 14223101 - 14223021
Alignment:
Q  46 gtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||||| ||||||  |||| |||| |||||||||||||||||| |||||| | || ||||||||||||| | ||||||    
T  14223101 gtgtcgtgtccgacactaacacgacacggacacttgtaattacactgaattatatgatattttaaaattattagttgtgtc 14223021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 26508162 - 26508110
Alignment:
Q  74 gacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||||||||||||||||| |||||||| ||||||| |||||||| ||||||||    
T  26508162 gacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtc 26508110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 34910397 - 34910317
Alignment:
Q  46 gtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||| ||| ||||||||| || |||| ||| |||||||||||||| |||||||| ||||||| |||||||| | ||||||    
T  34910397 gtgtcatgtccgacaccgatacgacaccgactcttgtaattacactgaattatgtgattttttcaaattattagttgtgtc 34910317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 126
Target Start/End: Complemental strand, 20503524 - 20503465
Alignment:
Q  67 caacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||||| |||||||||||||||||| |||||||| ||||||| |||||||| | ||||||    
T  20503524 caacaccgacacttgtaattacactgaattatgtcattttttcaaattatttgttgtgtc 20503465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 140
Target Start/End: Complemental strand, 28812599 - 28812499
Alignment:
Q  42 acatgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc--cgtgtcgtatccg 139  Q
    |||||| ||||||  |||||| |||| |||| ||||||||||| |||||| |||||||| |||| || |||||||| | ||||||  |||||||| ||||    
T  28812599 acatgtatcgtgtctgacaccaacacgacaccgacacttgtaactacactgaattatgtgatttcttcaaattattagttgtgtcggcgtgtcgtgtccg 28812500  T
Q  140 t 140  Q
    |    
T  28812499 t 28812499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 28918058 - 28918001
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||| |||||||||||||||||| |||||||| ||||||| |||||||| ||| ||||    
T  28918058 acaccgacacttgtaattacactgaattatgtgattttttcaaattattagctatgtc 28918001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 126
Target Start/End: Original strand, 49651780 - 49651845
Alignment:
Q  61 ccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||| |||| |||||||||||||||| | |||||||| ||||||| |||||||| || |||||    
T  49651780 ccgacacgacaccgacacttgtaattacagtgaattatgtgattttttcaaattattagccgtgtc 49651845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 55401132 - 55401075
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||| |||||||||||||||||| |||||||| ||||||| |||||||| | ||||||    
T  55401132 acaccgacacttgtaattacactaaattatgtgattttttcaaattattagttgtgtc 55401075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 15796273 - 15796353
Alignment:
Q  46 gtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||| |||| ||||||| |||| |||| |||| ||||||||||||| |||||| | ||||||| ||||||||  |||||||    
T  15796273 gtgttgtgtccgacacctacacgacaccgacaattgtaattacactgaattatatgattttttcaaattattaactgtgtc 15796353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 21256993 - 21257045
Alignment:
Q  74 gacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||||||||||||| ||| |||||||| ||||||| |||||||| ||||||||    
T  21256993 gacacttgtaattatactgaattatgtgattttttcaaattattagctgtgtc 21257045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 126
Target Start/End: Complemental strand, 21479197 - 21479118
Alignment:
Q  42 acatgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||||||||| ||||||||||||      |||||| ||||||||||| |||| ||| ||||||| |||||||| ||||||||    
T  21479197 acatgtgtcgtgtccgacaccgacacc-----gacactagtaattacactgaattgtgtgattttttcaaattattagctgtgtc 21479118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 117
Target Start/End: Original strand, 8039810 - 8039885
Alignment:
Q  42 acatgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattatt 117  Q
    |||||| || ||| |||||||||||| |||| ||||| | |||||||||| |||||| ||||||| | ||||||||    
T  8039810 acatgtctcatgtccgacaccgacacgacaccgacacatataattacactgaattatataattttctcaaattatt 8039885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 117
Target Start/End: Original strand, 41961629 - 41961700
Alignment:
Q  46 gtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattatt 117  Q
    ||||||||| ||| |||||||| |||| |||||||||||||||||  ||| |||| || |||| ||||||||    
T  41961629 gtgtcgtgtccgataccgacacgacaccgacacttgtaattacaccgaataatgtgatattttcaaattatt 41961700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 115
Target Start/End: Original strand, 8587023 - 8587069
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaatta 115  Q
    |||| |||||||||||||||||| |||||||| ||||||| ||||||    
T  8587023 acaccgacacttgtaattacacttaattatgtgattttttcaaatta 8587069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 11666070 - 11665953
Alignment:
Q  1 gaagcacggacactcctcgaattaagcgtgttccgat-ggacacatgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatg 99  Q
    ||||||||||||||||| |||||| ||||||||||||   | ||| |||||||||   ||| | |||| |||| ||||| | |||||||||| |||| ||    
T  11666070 gaagcacggacactccttgaattaggcgtgttccgatatcagacacgtgtcgtgtctaacatcaacacgacaccgacacatataattacactaaattgtg 11665971  T
Q  100 taattttttaaaattatt 117  Q
    | ||||| | ||||||||    
T  11665970 tgattttatcaaattatt 11665953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 14829766 - 14829690
Alignment:
Q  49 tcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||||| | |||||||||| |||| |||||||||||||||  | |||||||| | ||||| |||||||| ||||||||    
T  14829766 tcgtgtccaacaccgacacgacaccgacacttgtaattaccatgaattatgtga-tttttcaaattattagctgtgtc 14829690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 750597 - 750677
Alignment:
Q  46 gtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||||| ||| |||||||| |||| ||||||||||||| ||   |||||||| || |||| |||||||| | ||||||    
T  750597 gtgtcgtgtccgataccgacacgacaccgacacttgtaattgcagcgaattatgtgatattttcaaattattagttgtgtc 750677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 3185242 - 3185282
Alignment:
Q  61 ccgacacaacactgacacttgtaattacactcaattatgta 101  Q
    ||||||| |||||||||| |||||||||| |||||||||||    
T  3185242 ccgacacgacactgacacatgtaattacattcaattatgta 3185282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 106
Target Start/End: Original strand, 4990974 - 4991006
Alignment:
Q  74 gacacttgtaattacactcaattatgtaatttt 106  Q
    |||||||||||||||||| ||||||||||||||    
T  4990974 gacacttgtaattacactgaattatgtaatttt 4991006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 11610574 - 11610530
Alignment:
Q  73 tgacacttgtaattacactcaattatgtaattttttaaaattatt 117  Q
    |||||||||||| |||||| |||||||| ||||||| ||||||||    
T  11610574 tgacacttgtaactacactgaattatgtgatttttttaaattatt 11610530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 12083959 - 12083923
Alignment:
Q  70 cactgacacttgtaattacactcaattatgtaatttt 106  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  12083959 cactgacacttgtaattacactgaattatgtagtttt 12083923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 126
Target Start/End: Complemental strand, 14747625 - 14747561
Alignment:
Q  63 gacacaacactgacacttgtaattacactcaattatgt-aattttttaaaattattggctgtgtc 126  Q
    ||||| |||| ||| |||||||||||||| |||||||| | |||||| |||||||| ||||||||    
T  14747625 gacacgacacggacccttgtaattacactaaattatgtgatttttttcaaattattagctgtgtc 14747561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 117
Target Start/End: Original strand, 17568659 - 17568733
Alignment:
Q  42 acatgtgtcgtgttcgacaccgacac-aacactgacacttgtaattacactcaattatgtaattttttaaaattatt 117  Q
    |||||||| ||||| ||||| ||||| |||||| ||||||||||||||| | |||||||||||||| | ||||||||    
T  17568659 acatgtgttgtgtttgacac-gacaccaacact-acacttgtaattacattaaattatgtaattttctcaaattatt 17568733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 35994745 - 35994796
Alignment:
Q  74 gacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||||||||||||||||| |||||||| | ||||| |||||||| ||||||||    
T  35994745 gacacttgtaattacactgaattatgtga-tttttcaaattattagctgtgtc 35994796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 44)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 47989623 - 47989506
Alignment:
Q  1 gaagcacggacactcctcgaattaagcgtgttccgatgg-acacatgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatg 99  Q
    ||||||||||||||||||| |||| |||||| ||||||  | ||||||||||||| |||||||||||| |||| |||||||||||||||||| |||||||    
T  47989623 gaagcacggacactcctcggattaggcgtgtcccgatgtcagacatgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatg 47989524  T
Q  100 taattttttaaaattatt 117  Q
    | ||||||| ||||||||    
T  47989523 tgatttttttaaattatt 47989506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 117
Target Start/End: Original strand, 6612153 - 6612221
Alignment:
Q  49 tcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattatt 117  Q
    |||||| ||||| |||||| |||| |||||||||||||||||| |||||||||||||||| ||||||||    
T  6612153 tcgtgtccgacatcgacacgacaccgacacttgtaattacactgaattatgtaattttttcaaattatt 6612221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 31694643 - 31694751
Alignment:
Q  1 gaagcacggacactcctcgaattaagcgtgttccgatg--gacacatgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattat 98  Q
    ||||||||||||||||||  |||| |||||||||| ||  || | |||||| |||| |||||||||||| |||| |||||||||||||| ||| ||||||    
T  31694643 gaagcacggacactcctcagattaggcgtgttccggtgtcga-atatgtgttgtgtccgacaccgacacgacaccgacacttgtaattatactgaattat 31694741  T
Q  99 gtaatttttt 108  Q
    || |||||||    
T  31694742 gtgatttttt 31694751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 18337386 - 18337301
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattgg-----ctgtgtccgtgtcgtatccgtgtttcatag 149  Q
    |||| |||||||||||||||||| |||||||| ||||||| ||||||||||     | |||||||||||||||||||| |||||||    
T  18337386 acaccgacacttgtaattacactgaattatgtgattttttcaaattattggcatgtcagtgtccgtgtcgtatccgtgcttcatag 18337301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 21378637 - 21378573
Alignment:
Q  67 caacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtccgtgt 131  Q
    |||||| |||||||||||||||||| |||||||||||||||| || ||||| |||||||| ||||    
T  21378637 caacaccgacacttgtaattacactgaattatgtaattttttcaatttattagctgtgtcggtgt 21378573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 30173737 - 30173803
Alignment:
Q  42 acatgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaatttttt 108  Q
    ||||||||||||| ||| || ||||| |||| |||||||||||||||||| | ||||||||||||||    
T  30173737 acatgtgtcgtgtccgatacggacacgacaccgacacttgtaattacactgagttatgtaatttttt 30173803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 131
Target Start/End: Complemental strand, 17754379 - 17754306
Alignment:
Q  58 acaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtccgtgt 131  Q
    |||||||||| |||||||||| | || ||||||| |||||||||||||||| |||||||| || ||||| ||||    
T  17754379 acaccgacaccacactgacacatatagttacactgaattatgtaattttttcaaattattagcggtgtcggtgt 17754306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 22515889 - 22515946
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||| |||||||||||||||||| |||||||| ||||||| |||||||| ||||||||    
T  22515889 acaccgacacttgtaattacactaaattatgtgattttttcaaattattagctgtgtc 22515946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 25361965 - 25361896
Alignment:
Q  47 tgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattat 116  Q
    |||||||| |||||||||||| |||||||||| | |||||||||| |||||||| ||||| | |||||||    
T  25361965 tgtcgtgtccgacaccgacacgacactgacacatataattacactgaattatgtgattttctcaaattat 25361896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 113363 - 113299
Alignment:
Q  62 cgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||||| ||||  ||||||||||||||||| |||||||| ||||||| |||||||| ||||||||    
T  113363 cgacacgacacctacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtc 113299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 18190115 - 18190167
Alignment:
Q  74 gacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||||||||||||||||| |||||||||||||||| |||||||| | ||||||    
T  18190115 gacacttgtaattacactgaattatgtaattttttcaaattattaggtgtgtc 18190167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 40917875 - 40917751
Alignment:
Q  1 gaagcacggacactcctcgaattaagcgtgttccgatg---gacacatgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaatta 97  Q
    |||||||||||| |||||| |||| |||||| ||| ||   |||||  ||||||||| | |||||||||| |||| || ||||||||||||||| |||      
T  40917875 gaagcacggacagtcctcggattaggcgtgtcccggtgtcggacac--gtgtcgtgtccaacaccgacacgacaccgagacttgtaattacacttaat-- 40917780  T
Q  98 tgtaattttttaaaattattggctgtgtc 126  Q
    ||| ||||||| |||||||| ||||||||    
T  40917779 tgtgattttttcaaattattagctgtgtc 40917751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 126
Target Start/End: Original strand, 24577182 - 24577245
Alignment:
Q  63 gacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||| |||| |||||||||||||||||| |||||||| ||||||| |||||||| | ||||||    
T  24577182 gacacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagttgtgtc 24577245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 117
Target Start/End: Original strand, 32461443 - 32461513
Alignment:
Q  46 gtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattatt 117  Q
    ||||||||| ||||||||||||| |||  ||||||||||||||| | |||||||| ||||||| ||||||||    
T  32461443 gtgtcgtgtccgacaccgacaca-caccaacacttgtaattacattaaattatgtgattttttcaaattatt 32461513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 44482311 - 44482240
Alignment:
Q  45 tgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattat 116  Q
    |||||||||| |||||||||||| |||| ||||| | |||||||||| |||||||| ||||| | |||||||    
T  44482311 tgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgaattatgtgattttctcaaattat 44482240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 48450594 - 48450645
Alignment:
Q  74 gacacttgtaattacactcaattatgtaattttttaaaattattggctgtgt 125  Q
    |||||||||||||||||| |||||||| ||||||| |||||||| |||||||    
T  48450594 gacacttgtaattacactaaattatgttattttttcaaattattagctgtgt 48450645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 34315796 - 34315726
Alignment:
Q  42 acatgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaa 112  Q
    ||||||||||||||||||||||| || | || ||||| | |||||||||  ||||||||| ||||||||||    
T  34315796 acatgtgtcgtgttcgacaccgatacgataccgacacatataattacaccgaattatgtagttttttaaaa 34315726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 131
Target Start/End: Complemental strand, 6332742 - 6332666
Alignment:
Q  54 ttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtccgtgt 131  Q
    ||||||||| |||| |||| || ||||||||||||||| |||||||| | ||||| |||||||| | |||||||||||    
T  6332742 ttcgacaccaacacgacaccgatacttgtaattacactgaattatgtga-tttttcaaattattagttgtgtccgtgt 6332666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 15449215 - 15449272
Alignment:
Q  50 cgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttt 107  Q
    ||||| ||||||||| || |||| |||||||||||||||||| |||||||| ||||||    
T  15449215 cgtgtccgacaccgatacgacacagacacttgtaattacactaaattatgtgattttt 15449272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 19058858 - 19058915
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||| |||||||||||||||||| |||||||| || |||| |||||||| ||||||||    
T  19058858 acaccgacacttgtaattacactgaattatgttatctttttaaattattagctgtgtc 19058915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 21038161 - 21038092
Alignment:
Q  48 gtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattatt 117  Q
    ||||||| |||||||||||| |||||||| | | | |||||||| |||||||||||||| | ||||||||    
T  21038161 gtcgtgtccgacaccgacacgacactgacgcatatgattacactgaattatgtaattttcttaaattatt 21038092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 22881618 - 22881675
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||| |||||||||||||||||| |||||||| ||||||| |||||||| | ||||||    
T  22881618 acaccgacacttgtaattacactaaattatgtgattttttcaaattattagttgtgtc 22881675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 33420594 - 33420537
Alignment:
Q  219 gacatatatgatcaaaccgtaactaacgaatacgaccttaattgaaatgcacacattt 276  Q
    |||||||||| || || |||||||| ||||||||||| |||| |||||||||||||||    
T  33420594 gacatatatggtcgaatcgtaactatcgaatacgaccctaatagaaatgcacacattt 33420537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 38078663 - 38078720
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||| |||||||||||||||| | |||||||| ||||||| |||||||| ||||||||    
T  38078663 acaccgacacttgtaattacattgaattatgtgattttttcaaattattagctgtgtc 38078720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 41877472 - 41877529
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||| |||||||||||||||||| |||||||||||||| | |||||||| || |||||    
T  41877472 acaccgacacttgtaattacactaaattatgtaattttctcaaattattagcggtgtc 41877529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 46348385 - 46348442
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||| |||||||||||||||||| |||||| | ||||||| |||||||| ||||||||    
T  46348385 acaccgacacttgtaattacactaaattatatgattttttcaaattattagctgtgtc 46348442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 1704988 - 1705056
Alignment:
Q  63 gacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtccgtgt 131  Q
    ||||| |||| ||||||||||||||| || |||||||| ||||||| |||||||| | |||||| ||||    
T  1704988 gacacgacaccgacacttgtaattaccctgaattatgtgattttttcaaattattagatgtgtcggtgt 1705056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 1815314 - 1815270
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaat 113  Q
    |||| |||||||||||||||||| |||||||| ||||||||||||    
T  1815314 acaccgacacttgtaattacactgaattatgtgattttttaaaat 1815270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 126
Target Start/End: Original strand, 9629875 - 9629959
Alignment:
Q  42 acatgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||||||||| ||||| |||||| |||| ||||||| |||| ||||| |||||| | ||||| | |||||||| || |||||    
T  9629875 acatgtgtcgtgtccgacatcgacacgacaccgacacttataatcacactgaattatatgattttatcaaattattagcggtgtc 9629959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 126
Target Start/End: Complemental strand, 17778616 - 17778549
Alignment:
Q  56 cgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||||||||||| |||| ||||||||||||||||||    ||||| ||||||| |||||||| ||||||||    
T  17778616 cgacaccgacacgacaccgacacttgtaattacact---gtatgtgattttttcaaattattagctgtgtc 17778549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 40258935 - 40258983
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattatt 117  Q
    |||| |||||||||||||||||| |||||||| ||||||| ||||||||    
T  40258935 acaccgacacttgtaattacactgaattatgtgattttttcaaattatt 40258983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 8010278 - 8010337
Alignment:
Q  58 acaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattatt 117  Q
    ||||||||||||||  ||||||| |||||| ||| |||||| ||||||||| ||||||||    
T  8010278 acaccgacacaacatcgacacttataattatactgaattatataattttttcaaattatt 8010337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 125
Target Start/End: Complemental strand, 31015095 - 31015044
Alignment:
Q  74 gacacttgtaattacactcaattatgtaattttttaaaattattggctgtgt 125  Q
    |||||||||||||||||| |||||||| ||||| | |||||||| |||||||    
T  31015095 gacacttgtaattacactgaattatgtgattttctcaaattattagctgtgt 31015044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 6427544 - 6427482
Alignment:
Q  46 gtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaatttttt 108  Q
    ||||||||| |||| || |||| ||||||||||||||| ||||| | |||||||| |||||||    
T  6427544 gtgtcgtgtccgacgcctacacgacactgacacttgtagttacattgaattatgtgatttttt 6427482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 31672905 - 31672959
Alignment:
Q  77 acttgtaattacactcaattatgtaattttttaaaattattggctgtgtccgtgt 131  Q
    ||||||||||||||| ||||| || ||||||| |||||||| |||||||| ||||    
T  31672905 acttgtaattacactgaattaagtgattttttcaaattattagctgtgtcggtgt 31672959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 37055860 - 37055906
Alignment:
Q  71 actgacacttgtaattacactcaattatgtaattttttaaaattatt 117  Q
    ||||| ||||||||||||||| |||||||||||||| | ||||||||    
T  37055860 actgatacttgtaattacactaaattatgtaattttctcaaattatt 37055906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 35702590 - 35702647
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||||||||||||||||||| |||||| | |  |||| |||||||| ||||||||    
T  35702590 acactgacacttgtaattacacttaattatttgaagttttcaaattattagctgtgtc 35702647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 42359451 - 42359508
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||| |||||||||||||||||| |||| ||| ||||||| |||||||| | ||||||    
T  42359451 acaccgacacttgtaattacactgaattttgtgattttttcaaattattagatgtgtc 42359508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 5927342 - 5927390
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattatt 117  Q
    ||||||||||||||||||||| | |||||| | ||||||| ||||||||    
T  5927342 acactgacacttgtaattacattaaattatatgattttttcaaattatt 5927390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 126
Target Start/End: Original strand, 13011223 - 13011275
Alignment:
Q  75 acacttgtaattacactcaattatgt-aattttttaaaattattggctgtgtc 126  Q
    ||||||||||||||||| |||||||| | |||||| |||||||| ||||||||    
T  13011223 acacttgtaattacacttaattatgtgatttttttcaaattattagctgtgtc 13011275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 14359529 - 14359580
Alignment:
Q  74 gacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||||||||||||||||| |||||||| | ||||| |||||||| ||||||||    
T  14359529 gacacttgtaattacactaaattatgtga-tttttcaaattattagctgtgtc 14359580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 28273067 - 28273147
Alignment:
Q  46 gtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||||| ||||| ||| |  |||| |||||||||||||||||| |||||| | ||||||| |||| ||| | ||||||    
T  28273067 gtgtcgtgtccgacatcgataggacaccgacacttgtaattacactgaattatatgattttttcaaatgattagttgtgtc 28273147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 29144365 - 29144417
Alignment:
Q  74 gacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||||||||||||||  ||||| || |||||| |||||||| ||||||||    
T  29144365 gacacttgtaattacactgcattatctatttttttcaaattattagctgtgtc 29144417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 32434711 - 32434775
Alignment:
Q  62 cgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||| ||||| |||||||||||||||| | |||||||| | ||||| |||||||| | ||||||    
T  32434711 cgacaaaacacagacacttgtaattacaatgaattatgtgactttttcaaattattagttgtgtc 32434775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 39698620 - 39698541
Alignment:
Q  47 tgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||||||| |||||||||||| ||||||||||||||||||||||| |||||||| ||||||| |||||||| ||||||||    
T  39698620 tgtcgtgtccgacaccgacacgacactgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtc 39698541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 21522830 - 21522750
Alignment:
Q  46 gtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||||| |||||||||||| |||| |||| ||||||||||||| |||||||| |||||||||||||||| ||||||||    
T  21522830 gtgtcgtgtccgacaccgacacgacaccgacaattgtaattacactgaattatgttattttttaaaattattagctgtgtc 21522750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 21533396 - 21533316
Alignment:
Q  46 gtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||||| |||||||||||| |||| |||| ||||||||||||| |||||||| |||||||||||||||| ||||||||    
T  21533396 gtgtcgtgtccgacaccgacacgacaccgacaattgtaattacactgaattatgttattttttaaaattattagctgtgtc 21533316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 21542110 - 21542030
Alignment:
Q  46 gtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||||| |||||||||||| |||| |||||||||||||||||| |||||||| || |||| |||||||| | ||||||    
T  21542110 gtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgttatctttttaaattattagttgtgtc 21542030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 126
Target Start/End: Complemental strand, 19579823 - 19579701
Alignment:
Q  5 cacggacactcctcgaattaagcgtgttccgatgg-acacatgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaat 103  Q
    |||| |||||||||| |||| |||||| ||| ||  | |||| |||||||| |||||| ||||| |||| ||||||||||||| |||| |||||||| ||    
T  19579823 cacgtacactcctcggattaggcgtgtcccggtgttagacatatgtcgtgtccgacactgacacgacaccgacacttgtaattgcactaaattatgtgat 19579724  T
Q  104 tttttaaaattattggctgtgtc 126  Q
    ||| | |||||||| ||||||||    
T  19579723 tttctcaaattattagctgtgtc 19579701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 126
Target Start/End: Complemental strand, 7677789 - 7677705
Alignment:
Q  42 acatgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||| |||||  ||||||||||| |||| ||||||| ||||| |||| |||||||| ||||||| |||||||| ||||||||    
T  7677789 acatgtgacgtgtcagacaccgacacgacaccgacacttctaattgcactgaattatgtgattttttcaaattattagctgtgtc 7677705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 49 - 131
Target Start/End: Original strand, 37328826 - 37328908
Alignment:
Q  49 tcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtccgtgt 131  Q
    |||||| |||||||||||| |||| ||||| |||||||||||| |||| ||| ||||||  |||||||| |||||||| ||||    
T  37328826 tcgtgtccgacaccgacacgacaccgacacatgtaattacactgaattttgtgatttttacaaattatttgctgtgtcggtgt 37328908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 21191058 - 21191115
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||| |||||||||||||||||| |||||||| ||||||| |||||||| ||||||||    
T  21191058 acaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtc 21191115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 43001865 - 43001800
Alignment:
Q  61 ccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||||||| |||  ||||||||||||||||| |||||||||||||||| |||||||| || |||||    
T  43001865 ccgacacatcaccaacacttgtaattacactgaattatgtaattttttcaaattattagcagtgtc 43001800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 14674321 - 14674269
Alignment:
Q  74 gacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||||||||||||||||| |||||||| ||||||| |||||||| ||||||||    
T  14674321 gacacttgtaattacactaaattatgtgattttttcaaattattagctgtgtc 14674269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 58 - 126
Target Start/End: Complemental strand, 41633803 - 41633735
Alignment:
Q  58 acaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||| || |||| |||| ||||||||||||| |||||||||| ||||| |||||||| ||||||||    
T  41633803 acaccgatacgacaccgacatttgtaattacactgaattatgtaaatttttcaaattattagctgtgtc 41633735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 21576752 - 21576803
Alignment:
Q  74 gacacttgtaattacactcaattatgtaattttttaaaattattggctgtgt 125  Q
    |||||||||||||||||| |||||||| ||||||| |||||||| |||||||    
T  21576752 gacacttgtaattacactgaattatgtgattttttcaaattattagctgtgt 21576803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 18592199 - 18592093
Alignment:
Q  1 gaagcacggacactcctcgaattaagcgtgttccgatgg-acacatgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatg 99  Q
    ||||||||||||||| ||||||||  ||||| ||||||  | ||| |||| |||| |||||||||||| |||| | ||| | |||||||| | |||||||    
T  18592199 gaagcacggacactcatcgaattagccgtgtcccgatgtcagacacgtgttgtgtccgacaccgacacgacaccggcacatataattacattgaattatg 18592100  T
Q  100 taatttt 106  Q
    |||||||    
T  18592099 taatttt 18592093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 131
Target Start/End: Complemental strand, 42893417 - 42893355
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtccgtgt 131  Q
    |||| ||||||||||||||||||  ||||||| ||||||| |||||||| |||||||| ||||    
T  42893417 acaccgacacttgtaattacactggattatgtgattttttcaaattattagctgtgtcggtgt 42893355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 142
Target Start/End: Original strand, 5894827 - 5894908
Alignment:
Q  61 ccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtccgtgtcgtatccgtgt 142  Q
    ||||||| |||| |||||||||| ||| | | |||||| | ||||||| |||||||| | |||||||||||||| |||||||    
T  5894827 ccgacacgacaccgacacttgtagttagattaaattatatgattttttcaaattattagttgtgtccgtgtcgtgtccgtgt 5894908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 6247679 - 6247622
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||| |||||||||||||||||| |||||||| ||||||| |||||||| | ||||||    
T  6247679 acaccgacacttgtaattacactgaattatgtgattttttcaaattattagatgtgtc 6247622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 31084388 - 31084323
Alignment:
Q  61 ccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||| |||  |||||||||||||||| | |||||||| ||||||| |||||||| ||||||||    
T  31084388 ccgacacgacatcgacacttgtaattacattgaattatgtgattttttcaaattattagctgtgtc 31084323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 33178082 - 33178025
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||| |||||||||||||||||| |||||||| ||||||| |||||||| | ||||||    
T  33178082 acaccgacacttgtaattacactaaattatgtgatttttttaaattattagttgtgtc 33178025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 17088355 - 17088303
Alignment:
Q  56 cgacaccgacacaacactgacacttgtaattacactcaattatgtaatttttt 108  Q
    |||||||||||| ||| ||||||||||||| ||||| |||||||| |||||||    
T  17088355 cgacaccgacacgacagtgacacttgtaatcacactaaattatgtgatttttt 17088303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 115
Target Start/End: Original strand, 6326302 - 6326345
Alignment:
Q  72 ctgacacttgtaattacactcaattatgtaattttttaaaatta 115  Q
    |||||||||||||||||||| |||||||||||||| | ||||||    
T  6326302 ctgacacttgtaattacactgaattatgtaattttctcaaatta 6326345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 117
Target Start/End: Original strand, 24906308 - 24906351
Alignment:
Q  74 gacacttgtaattacactcaattatgtaattttttaaaattatt 117  Q
    |||||||||||||||||| |||||||| ||||||| ||||||||    
T  24906308 gacacttgtaattacactgaattatgtcattttttcaaattatt 24906351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 15884045 - 15883987
Alignment:
Q  69 acactgacacttgtaattacactcaattatgt-aattttttaaaattattggctgtgtc 126  Q
    |||| |||||||||||||||||| |||||||| | |||||| |||||||| ||||||||    
T  15884045 acaccgacacttgtaattacactgaattatgtgattttttttaaattatttgctgtgtc 15883987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 21351895 - 21351969
Alignment:
Q  57 gacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtccgtgt 131  Q
    ||||||||||  |||| |||||||||||||||||| |||||||| | |||||  ||||||| | |||||| ||||    
T  21351895 gacaccgacatgacaccgacacttgtaattacactgaattatgtgactttttccaattattagttgtgtcggtgt 21351969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 8420084 - 8420027
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||| |||||||||||||||| | |||||||| ||||||| |||||||| ||| ||||    
T  8420084 acaccgacacttgtaattacattgaattatgttattttttcaaattattagctatgtc 8420027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 7218274 - 7218326
Alignment:
Q  74 gacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||||||||||||||||| |||||||| |||| || |||||||| ||| ||||    
T  7218274 gacacttgtaattacactgaattatgtgatttatttaaattattagctctgtc 7218326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 21814341 - 21814261
Alignment:
Q  46 gtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||||| |||||||||||| |||| ||||| | ||||||||||  ||| ||| ||||| |||||  ||| ||||||||    
T  21814341 gtgtcgtgtccgacaccgacacgacaccgacacatataattacactgcattttgtgattttctaaaaaaattagctgtgtc 21814261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 126
Target Start/End: Complemental strand, 22013458 - 22013414
Alignment:
Q  82 taattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||||||||| |||||||||||||||  |||||||| ||||||||    
T  22013458 taattacactaaattatgtaatttttccaaattattagctgtgtc 22013414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 3782 - 3899
Alignment:
Q  1 gaagcacggacactcctcgaattaagcgtgttccgatggac-acatgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatg 99  Q
    |||||| |||||||||||| |||| ||||||  |||||    ||||||||||||| ||||||| |||| ||||||||||||||||||||||| |||||||    
T  3782 gaagcaaggacactcctcggattaggcgtgtctcgatgtcggacatgtgtcgtgtccgacaccaacacgacactgacacttgtaattacactgaattatg 3881  T
Q  100 taattttttaaaattatt 117  Q
    | ||||||| ||||||||    
T  3882 tgatttttttaaattatt 3899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 24339722 - 24339642
Alignment:
Q  46 gtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||||| |||||||||||| |||| |||||||||||||||||| |||||||| ||||||| |||||||| ||||||||    
T  24339722 gtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtc 24339642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 7438832 - 7438706
Alignment:
Q  1 gaagcacggacactcctcgaattaagcgtgttccgatgga-cacatgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatg 99  Q
    ||||||||||||||||| |||||| |||||| |   ||   ||||||||||||||| ||||||||||  |||| |||||||||||||||| | |||||||    
T  7438832 gaagcacggacactccttgaattaggcgtgtcctagtgtcgcacatgtgtcgtgtttgacaccgacatgacaccgacacttgtaattacattgaattatg 7438733  T
Q  100 taattttttaaaattattggctgtgtc 126  Q
    | ||||||| ||||||||  |||||||    
T  7438732 tgattttttcaaattattaactgtgtc 7438706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 13770756 - 13770691
Alignment:
Q  61 ccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||| |||  |||||||||||||||||| |||||||||||||||| |||||||| ||||||||    
T  13770756 ccgacacgacaacgacacttgtaattacactgaattatgtaatttttttaaattattagctgtgtc 13770691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 132
Target Start/End: Original strand, 26033451 - 26033526
Alignment:
Q  57 gacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtccgtgtc 132  Q
    ||||||||||| | || |||||||||||||||||| |||||||| ||||||| |||||||| |||| ||| |||||    
T  26033451 gacaccgacacgagaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgcgtcagtgtc 26033526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 108
Target Start/End: Complemental strand, 2334333 - 2334268
Alignment:
Q  42 acatgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaatttttt 108  Q
    ||||||||||||| |||||| ||||| |||| |||||||||||||||||| |||||||| |||||||    
T  2334333 acatgtgtcgtgtccgacac-gacacgacaccgacacttgtaattacactaaattatgtgatttttt 2334268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 15902905 - 15902831
Alignment:
Q  43 catgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattatt 117  Q
    |||||||||||| ||| ||||||||||||| ||||| | |||||||||| |||||||| ||||| | ||||||||    
T  15902905 catgtgtcgtgtccgataccgacacaacaccgacacatataattacactaaattatgtgattttatcaaattatt 15902831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 108
Target Start/End: Complemental strand, 21560587 - 21560521
Alignment:
Q  42 acatgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaatttttt 108  Q
    |||||| ||||||| |||||||| || |||| |||||||||||||||||| |||||||| |||||||    
T  21560587 acatgtatcgtgtttgacaccgatacgacaccgacacttgtaattacactgaattatgtgatttttt 21560521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 50 - 134
Target Start/End: Complemental strand, 8160492 - 8160408
Alignment:
Q  50 cgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtccgtgtcgt 134  Q
    |||||||||||||||||| | ||  |||| | |||||||||| |||||||||||||| | |||||||| || ||||| |||||||    
T  8160492 cgtgttcgacaccgacacgataccaacacatataattacactaaattatgtaattttcttaaattattagcggtgtcagtgtcgt 8160408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 9408324 - 9408384
Alignment:
Q  57 gacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattatt 117  Q
    |||||||| || |||| |||||||||||||||||| |||||||| ||||||| ||||||||    
T  9408324 gacaccgatacgacaccgacacttgtaattacactaaattatgtgattttttcaaattatt 9408384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 11665419 - 11665499
Alignment:
Q  46 gtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||||||||||||||||||||  |||  ||||||| |||||| ||| |||||||| ||||||| |||||||| | ||||||    
T  11665419 gtgtcgtgttcgacaccgacatgacatcgacacttataattagactgaattatgtgattttttcaaattattagttgtgtc 11665499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 42 - 126
Target Start/End: Complemental strand, 32308204 - 32308120
Alignment:
Q  42 acatgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||||||||| | |||||||||| |||||||||| |  ||||||||| |||||||| ||||| | |||||||| || |||||    
T  32308204 acatgtgtcgtgtccaacaccgacacgacactgacacatacaattacactgaattatgtgattttctcaaattattagcggtgtc 32308120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 117
Target Start/End: Complemental strand, 6028705 - 6028634
Alignment:
Q  46 gtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattatt 117  Q
    |||||||||||||||| ||||| |||| |||| ||||||||||| | |||||||| || |||| ||||||||    
T  6028705 gtgtcgtgttcgacactgacacgacaccgacatttgtaattacattaaattatgttatattttcaaattatt 6028634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 9778565 - 9778494
Alignment:
Q  61 ccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtccgtgtc 132  Q
    ||||||| |||| |||||||||||||| ||| |||||||| ||||||| |||||||  |||||||| |||||    
T  9778565 ccgacacgacaccgacacttgtaattatactgaattatgtgattttttcaaattatcagctgtgtcagtgtc 9778494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 126
Target Start/End: Complemental strand, 25481953 - 25481902
Alignment:
Q  75 acacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||||||||||||| |||||||| ||||||| |||||||| ||||||||    
T  25481953 acacttgtaattacactgaattatgtgattttttcaaattattagctgtgtc 25481902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 5409830 - 5409892
Alignment:
Q  61 ccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgt 123  Q
    ||||||| |||| ||||||||||||| |||| |||||||| ||||||| |||||||| |||||    
T  5409830 ccgacacgacaccgacacttgtaattgcactgaattatgtgattttttcaaattattagctgt 5409892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 131
Target Start/End: Original strand, 11061078 - 11061140
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtccgtgt 131  Q
    |||| |||||||||||||| ||| |||||||| ||||||| |||||||| |||||||| ||||    
T  11061078 acaccgacacttgtaattatactaaattatgtgattttttcaaattattagctgtgtcggtgt 11061140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 117
Target Start/End: Original strand, 18013070 - 18013124
Alignment:
Q  63 gacacaacactgacacttgtaattacactcaattatgtaattttttaaaattatt 117  Q
    ||||| |||||||||| | |||||||||| |||||||||||||||| ||||||||    
T  18013070 gacacgacactgacacatataattacactgaattatgtaatttttttaaattatt 18013124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 18039067 - 18039017
Alignment:
Q  58 acaccgacacaacactgacacttgtaattacactcaattatgtaatttttt 108  Q
    |||||||||| |||| |||||||||||||||||| |||||||| |||||||    
T  18039067 acaccgacacgacaccgacacttgtaattacactgaattatgtgatttttt 18039017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 117
Target Start/End: Complemental strand, 27945104 - 27945050
Alignment:
Q  63 gacacaacactgacacttgtaattacactcaattatgtaattttttaaaattatt 117  Q
    ||||| |||| |||||||||||||||||| |||||||||||||| | ||||||||    
T  27945104 gacacgacaccgacacttgtaattacactgaattatgtaattttctcaaattatt 27945050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 11272569 - 11272637
Alignment:
Q  50 cgtgttcgacaccgacacaacactgacacttgtaattacactcaat--tatgtaattttttaaaattat 116  Q
    ||||| |||||||||||| |||| |||||||||||||||||| |||  ||||| ||||||| |||||||    
T  11272569 cgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatatgtgattttttcaaattat 11272637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 13300487 - 13300419
Alignment:
Q  49 tcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattatt 117  Q
    ||||||||||||||||||  |||| || ||| ||||||||||| |||||| | ||||||| ||||||||    
T  13300487 tcgtgttcgacaccgacatgacaccgagactggtaattacactgaattatatgattttttcaaattatt 13300419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 21880209 - 21880161
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattatt 117  Q
    |||| |||||||||||||||||| |||||||||||||| | ||||||||    
T  21880209 acaccgacacttgtaattacactgaattatgtaattttctcaaattatt 21880161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 24105730 - 24105678
Alignment:
Q  74 gacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||||||||||||||||| ||| ||| |||||||| |||||||| ||||||||    
T  24105730 gacacttgtaattacactgaatcatgcaattttttcaaattattagctgtgtc 24105678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 11831511 - 11831432
Alignment:
Q  47 tgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||||||| ||||||||| || ||||  | ||||||||||||||| |||||| | ||||||| |||||||| | ||||||    
T  11831511 tgtcgtgtccgacaccgatacgacacgaatacttgtaattacactaaattatatgattttttcaaattattagttgtgtc 11831432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 63 - 118
Target Start/End: Original strand, 12843171 - 12843226
Alignment:
Q  63 gacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattg 118  Q
    ||||| |||||||||| |||||||||| | |||||||||||||| | |||||||||    
T  12843171 gacacgacactgacacatgtaattacattgaattatgtaattttatcaaattattg 12843226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 19213860 - 19213797
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtccgtgtc 132  Q
    |||| |||||||||| |||||||  ||||||| |||||||||||||||| || ||||| |||||    
T  19213860 acaccgacacttgtatttacactgcattatgtgattttttaaaattattagcagtgtcagtgtc 19213797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 131
Target Start/End: Complemental strand, 3991381 - 3991319
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtccgtgt 131  Q
    |||| |||||||||||||| ||| |||||||| ||||||| |||||||| | |||||| ||||    
T  3991381 acaccgacacttgtaattatactgaattatgtgattttttcaaattattagttgtgtcggtgt 3991319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 28155627 - 28155570
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||| |||||||||||||||||  |||||||||||||| | |||||||| || |||||    
T  28155627 acaccgacacttgtaattacaccgaattatgtaattttctcaaattattagcggtgtc 28155570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 8056929 - 8056989
Alignment:
Q  51 gtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaa 111  Q
    ||||| |||| ||||||||||  ||  ||| |||||||||| |||||||||||||||||||    
T  8056929 gtgtttgacatcgacacaacatcgatgcttataattacactgaattatgtaattttttaaa 8056989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 9933357 - 9933321
Alignment:
Q  42 acatgtgtcgtgttcgacaccgacacaacactgacac 78  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  9933357 acatgtgtcgtgtccgacaccgacacgacactgacac 9933321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 21864860 - 21864801
Alignment:
Q  74 gacacttgtaattacactcaattatgtaa--ttttttaaaattattggctgtgtccgtgt 131  Q
    |||||||||||||||||| |||||| | |  |||||| |||||||| |||||||||||||    
T  21864860 gacacttgtaattacactaaattatatgattttttttcaaattattagctgtgtccgtgt 21864801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 25822735 - 25822655
Alignment:
Q  46 gtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||||| ||| ||||| || |||| |||||||||||||||||| |||| ||   |||||| |||||||| | ||||||    
T  25822735 gtgtcgtgtccgataccgatacgacaccgacacttgtaattacactgaattgtgattttttttcaaattattagttgtgtc 25822655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 46550792 - 46550832
Alignment:
Q  68 aacactgacacttgtaattacactcaattatgtaatttttt 108  Q
    ||||||||||| ||| ||||||||||||||||| |||||||    
T  46550792 aacactgacacatgtgattacactcaattatgtcatttttt 46550832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 36)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 17435279 - 17435199
Alignment:
Q  46 gtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||||| ||||| ||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||| ||| ||||    
T  17435279 gtgtcgtgtccgacatcgacaaaacactaacacttgtaattacactgaattatgtaattttttaaaattattagctatgtc 17435199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 12696389 - 12696324
Alignment:
Q  61 ccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||    
T  12696389 ccgacacgacactgacacttgtaattacactgaattatgtaattttttcaaattattagctgtgtc 12696324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 16766777 - 16766697
Alignment:
Q  46 gtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||| |||| |||||||||||| |||| |||||||||||||||||| |||||||| ||||||| |||||||| ||||||||    
T  16766777 gtgttgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtc 16766697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 56 - 117
Target Start/End: Complemental strand, 9522961 - 9522900
Alignment:
Q  56 cgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattatt 117  Q
    ||||||||||||||||| |||||||||||||||||| |||||||| ||||||| ||||||||    
T  9522961 cgacaccgacacaacaccgacacttgtaattacactgaattatgtgatttttttaaattatt 9522900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 51 - 126
Target Start/End: Original strand, 9107354 - 9107429
Alignment:
Q  51 gtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||| |||||||||||| |||| |||||||||||||||||| |||| ||| ||||||| |||||||| ||||||||    
T  9107354 gtgtccgacaccgacacgacaccgacacttgtaattacactgaattttgtgattttttcaaattattagctgtgtc 9107429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 5970085 - 5970167
Alignment:
Q  44 atgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||||||| |||||||||||| ||||  ||| ||||||||||||| |||||||| ||||||| ||||||||  |||||||    
T  5970085 atgtgtcgtgtccgacaccgacacgacacccacatttgtaattacactgaattatgtgattttttcaaattattaactgtgtc 5970167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 7977832 - 7977889
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||| |||||||||||||||||| |||||||||||||||| |||||||| ||||||||    
T  7977832 acaccgacacttgtaattacactgaattatgtaattttttcaaattattagctgtgtc 7977889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 31385045 - 31384929
Alignment:
Q  1 gaagcacggacactcctcgaattaagcgtgttccgatggac-acatgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatg 99  Q
    ||||||||||||||||| | |||| |||||| ||| || |  ||| ||||||||| | ||||  |||| ||||||||||||||||||||||| |||||||    
T  31385045 gaagcacggacactccttggattaggcgtgtcccggtgtaggacacgtgtcgtgtccaacact-acacgacactgacacttgtaattacactgaattatg 31384947  T
Q  100 taattttttaaaattatt 117  Q
    | ||||||| ||||||||    
T  31384946 tgattttttcaaattatt 31384929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 8365498 - 8365578
Alignment:
Q  46 gtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||||| ||| |||||||| |||| |||||||||||||||||  |||||||| || |||| |||||||| | ||||||    
T  8365498 gtgtcgtgtccgataccgacacgacaccgacacttgtaattacaccgaattatgtgatattttcaaattattagttgtgtc 8365578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 8714062 - 8713998
Alignment:
Q  44 atgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaatttttt 108  Q
    ||||||||||| |||||||||||| ||||  ||| ||||||||||||| |||||||| |||||||    
T  8714062 atgtgtcgtgtccgacaccgacacgacacccacatttgtaattacactgaattatgtgatttttt 8713998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 117
Target Start/End: Original strand, 25038050 - 25038121
Alignment:
Q  46 gtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattatt 117  Q
    |||||||||  |||||| |||||| || |||| ||||||||||||| |||||||||||||| | ||||||||    
T  25038050 gtgtcgtgtcggacaccaacacaataccgacatttgtaattacactaaattatgtaattttctcaaattatt 25038121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 28715352 - 28715289
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtccgtgtc 132  Q
    |||| |||||||||||||||||| |||||||| ||||||| |||||||| || ||||| |||||    
T  28715352 acaccgacacttgtaattacactgaattatgtcattttttcaaattattagccgtgtcagtgtc 28715289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 117
Target Start/End: Original strand, 10770670 - 10770724
Alignment:
Q  63 gacacaacactgacacttgtaattacactcaattatgtaattttttaaaattatt 117  Q
    ||||| |||| |||||||||||||||||| |||||||| ||||||| ||||||||    
T  10770670 gacacgacaccgacacttgtaattacactgaattatgtgattttttcaaattatt 10770724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 126
Target Start/End: Original strand, 17841598 - 17841648
Alignment:
Q  76 cacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||||||||||||||| |||||||| ||||||| |||||||| ||||||||    
T  17841598 cacttgtaattacactaaattatgtgattttttcaaattattagctgtgtc 17841648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 34595191 - 34595134
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||| |||||||||||||||||| |||||||| ||||||| |||||||| | ||||||    
T  34595191 acaccgacacttgtaattacactgaattatgtgattttttcaaattattagttgtgtc 34595134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 6898283 - 6898331
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattatt 117  Q
    |||| |||||||||||||||||| ||||||||||||| || ||||||||    
T  6898283 acaccgacacttgtaattacacttaattatgtaatttgttcaaattatt 6898331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 26562773 - 26562709
Alignment:
Q  42 acatgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaatttt 106  Q
    ||||||| |||||||||||||||||| |||  ||||| | |||||||||| |||||||| |||||    
T  26562773 acatgtgccgtgttcgacaccgacacgacatcgacacatataattacactgaattatgtgatttt 26562709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 117
Target Start/End: Original strand, 6327525 - 6327568
Alignment:
Q  74 gacacttgtaattacactcaattatgtaattttttaaaattatt 117  Q
    |||||||||||||||||| |||||| ||||||||| ||||||||    
T  6327525 gacacttgtaattacacttaattatataattttttcaaattatt 6327568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 7973716 - 7973665
Alignment:
Q  64 acacaacactgacacttgtaattacactcaattatgtaattttttaaaatta 115  Q
    |||| |||| ||||||| |||||||||| |||||||||||||||| ||||||    
T  7973716 acacgacaccgacacttataattacacttaattatgtaatttttttaaatta 7973665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 63 - 125
Target Start/End: Original strand, 9911524 - 9911587
Alignment:
Q  63 gacacaacactgacacttgtaattacactcaattatgtaattt-tttaaaattattggctgtgt 125  Q
    ||||| |||| |||||||||||||||||| |||||||| |||| ||| |||||||| |||||||    
T  9911524 gacacgacaccgacacttgtaattacactgaattatgtgatttcttttaaattattagctgtgt 9911587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 117
Target Start/End: Original strand, 4118317 - 4118383
Alignment:
Q  51 gtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattatt 117  Q
    |||| |||||| ||||||| ||  ||||||||||||||| | |||||||| ||||||| ||||||||    
T  4118317 gtgtccgacactgacacaaaaccaacacttgtaattacatttaattatgtgattttttcaaattatt 4118383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 115
Target Start/End: Original strand, 10339100 - 10339174
Alignment:
Q  42 acatgtgtcgtgttcgacaccgacacaacactgacacttgtaatt-acactcaattatgtaattttttaaaatta 115  Q
    ||||||||||||| ||||||||||||  ||||||||| | ||||| ||||| |||||||| ||||| | ||||||    
T  10339100 acatgtgtcgtgtccgacaccgacacggcactgacacatataattaacactgaattatgtgattttctcaaatta 10339174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 16833366 - 16833308
Alignment:
Q  68 aacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||| |||||||||||||||||| || ||||| ||||||| |||||||| | ||||||    
T  16833366 aacaccgacacttgtaattacactgaagtatgtgattttttcaaattattagttgtgtc 16833308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 101
Target Start/End: Original strand, 21395292 - 21395342
Alignment:
Q  51 gtgttcgacaccgacacaacactgacacttgtaattacactcaattatgta 101  Q
    |||| |||||| ||||| |||| |||||||||||||||||| |||||||||    
T  21395292 gtgtccgacactgacacgacaccgacacttgtaattacactaaattatgta 21395342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 124
Target Start/End: Complemental strand, 31959211 - 31959161
Alignment:
Q  74 gacacttgtaattacactcaattatgtaattttttaaaattattggctgtg 124  Q
    ||||||||||||||||||  ||||||| ||||||| |||||||| ||||||    
T  31959211 gacacttgtaattacactgcattatgtgattttttcaaattattagctgtg 31959161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 426516 - 426573
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||| |||||||||||||||| | |||||||| ||||||| ||||||||  |||||||    
T  426516 acaccgacacttgtaattacatttaattatgtgattttttcaaattattaactgtgtc 426573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 853861 - 853918
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||| ||||||||||||| |||| |||||||| ||||||| |||||||| | ||||||    
T  853861 acaccgacacttgtaattgcacttaattatgtgattttttcaaattattagttgtgtc 853918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 7801158 - 7801215
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||| ||||||||||||||| || |||||||| ||||||| |||||||| | ||||||    
T  7801158 acaccgacacttgtaattacgctgaattatgtgattttttcaaattattagttgtgtc 7801215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 15489734 - 15489791
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||| |||||||||||||||| | |||| ||||||||||| |||||||| | ||||||    
T  15489734 acaccgacacttgtaattacattgaattgtgtaattttttcaaattattagttgtgtc 15489791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 16111746 - 16111795
Alignment:
Q  56 cgacaccgacacaacactgacacttgtaattacactcaattatgtaattt 105  Q
    |||| ||||||| |||||||||| | |||||||||| |||||||||||||    
T  16111746 cgactccgacacgacactgacacctataattacactaaattatgtaattt 16111795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 785440 - 785488
Alignment:
Q  52 tgttcgacaccgacacaacactgacacttgtaattacactcaattatgt 100  Q
    |||||||||||||||| |||| ||||||||| |||||| | ||||||||    
T  785440 tgttcgacaccgacacgacaccgacacttgtgattacattgaattatgt 785488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 1191707 - 1191759
Alignment:
Q  74 gacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||||||||||||||||| |||| ||| | ||||| |||||||| ||||||||    
T  1191707 gacacttgtaattacactgaattttgtgaatttttcaaattattagctgtgtc 1191759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 1681810 - 1681758
Alignment:
Q  74 gacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||||||||||||||||| ||||| || ||||||| |||||||| | ||||||    
T  1681810 gacacttgtaattacactgaattacgtgattttttcaaattattagttgtgtc 1681758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 16488569 - 16488649
Alignment:
Q  46 gtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||||| |||||||||||| |||| ||||| | ||||||||||  ||| ||| ||||| |||||  ||| ||||||||    
T  16488569 gtgtcgtgtccgacaccgacacgacaccgacacatataattacactgcattttgtgattttctaaaaaaattagctgtgtc 16488649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 126
Target Start/End: Complemental strand, 18367920 - 18367836
Alignment:
Q  42 acatgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||||||||||||  ||||||||||| |||| ||||| | ||||||||||  ||| ||| ||||| |||||  ||| ||||||||    
T  18367920 acatgtgtcgtgtctgacaccgacacgacaccgacacatataattacactgcattttgtgattttctaaaaaaattagctgtgtc 18367836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 22746042 - 22745994
Alignment:
Q  41 cacatgtgtcgtgttcgacaccgacacaacactgacacttgtaattaca 89  Q
    ||||| |||||||||||||| |||||| |||| ||||||||| ||||||    
T  22746042 cacatttgtcgtgttcgacagcgacacgacaccgacacttgtgattaca 22745994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1079 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold1079
Description:

Target: scaffold1079; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 150 - 279
Target Start/End: Complemental strand, 154 - 26
Alignment:
Q  150 ccgcagggcatagaggggggagatcataagtgtctatactgtaaaattgattttcgtaggaatgaaatagacatatatgatcaaaccgtaactaacgaat 249  Q
    ||||| ||||||||||||| || ||||||| |||||||| ||||||||||||||||  | ||||||| ||||||||||| |  || |||||| |  ||||    
T  154 ccgcaaggcatagaggggg-aggtcataagcgtctataccgtaaaattgattttcgacgaaatgaaaaagacatatatggtagaatcgtaaccatagaat 56  T
Q  250 acgaccttaattgaaatgcacacatttgtc 279  Q
    |||||| |||| |||||||| |||||||||    
T  55 acgaccctaatcgaaatgcatacatttgtc 26  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 20239 - 20172
Alignment:
Q  59 caccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||||| ||||||||||||||||||||||| |||||||| ||||||| |||||||| ||||||||    
T  20239 caccgacacgacactgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtc 20172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 22652102 - 22651976
Alignment:
Q  1 gaagcacggacactcctcgaattaagcgtgttccgat---ggacacatgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaatta 97  Q
    ||||||||||||||||||| ||||  ||||| ||| |   |||||||  |||||||| |||||||||||| |||| |||||||||||||| | | |||||    
T  22652102 gaagcacggacactcctcggattagacgtgtcccggtgtcggacaca--tgtcgtgtccgacaccgacacgacaccgacacttgtaattatattgaatta 22652005  T
Q  98 tgtaattttttaaaattattggctgtgtc 126  Q
    ||| ||||||| |||||||| ||||||||    
T  22652004 tgtgattttttcaaattattagctgtgtc 22651976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 2572035 - 2572115
Alignment:
Q  46 gtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||||| |||||| ||||| |||| |||||||||||||||||| |||||||| ||||||| |||||||| | ||||||    
T  2572035 gtgtcgtgtccgacacagacacgacaccgacacttgtaattacactaaattatgtgattttttcaaattattaggtgtgtc 2572115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 21465538 - 21465399
Alignment:
Q  1 gaagcacggacactcctcgaattaagcgtgttcc---gatggacacatgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaatta 97  Q
    |||||||||||||||||| ||||| |||| | ||   | |||||||  ||||||||| |||||| ||||| ||||  |||||||||||||||   |||||    
T  21465538 gaagcacggacactcctcaaattaggcgtatccctgtgttggacac--gtgtcgtgtccgacactgacacgacaccaacacttgtaattacatcgaatta 21465441  T
Q  98 tgtaattttttaaaattattggctgtgtccgtgtcgtatccg 139  Q
    | | ||||||| |||||||| |||||||||||||||| ||||    
T  21465440 tatgattttttcaaattattagctgtgtccgtgtcgtgtccg 21465399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 57 - 132
Target Start/End: Complemental strand, 25566910 - 25566835
Alignment:
Q  57 gacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtccgtgtc 132  Q
    |||||| |||| |||| |||||||||||||||||| |||||||| ||||||| |||||||| |||||||| |||||    
T  25566910 gacaccaacacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcagtgtc 25566835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 29510237 - 29510363
Alignment:
Q  1 gaagcacggacactcctcgaattaagcgtgttccgatg---gacacatgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaatta 97  Q
    ||||||||||||||||||| |||| | |||| ||| ||   |||||  | ||||||| |||||||||||| |||| |||||||||||||| ||| ||||     
T  29510237 gaagcacggacactcctcggattaggtgtgtcccggtgtcggacac--gcgtcgtgtccgacaccgacactacaccgacacttgtaattatactgaattt 29510334  T
Q  98 tgtaattttttaaaattattggctgtgtc 126  Q
    ||| ||||||| |||||||| ||||||||    
T  29510335 tgtgattttttcaaattattagctgtgtc 29510363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 69 - 131
Target Start/End: Complemental strand, 8343373 - 8343311
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtccgtgt 131  Q
    ||||||||||||||||||||||| |||||||| ||||||| |||||||| ||| |||| ||||    
T  8343373 acactgacacttgtaattacactaaattatgtgattttttcaaattattagctatgtcggtgt 8343311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 69 - 139
Target Start/End: Complemental strand, 40332248 - 40332178
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtccgtgtcgtatccg 139  Q
    |||| |||||||||||||||||| |||||||| ||||| | |||||||| || ||||||||||||| ||||    
T  40332248 acaccgacacttgtaattacactgaattatgtgattttctcaaattatttgcagtgtccgtgtcgtgtccg 40332178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 22197744 - 22197800
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgt 125  Q
    ||||||||||||||||||||||| |||||||| | ||||| |||||||| |||||||    
T  22197744 acactgacacttgtaattacactaaattatgtgaatttttcaaattattagctgtgt 22197800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 47 - 106
Target Start/End: Original strand, 27067280 - 27067337
Alignment:
Q  47 tgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaatttt 106  Q
    |||||||| |||||||||||| |||||||||||||||||||||   ||||||||||||||    
T  27067280 tgtcgtgtccgacaccgacacgacactgacacttgtaattaca--gaattatgtaatttt 27067337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 8343029 - 8342966
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtccgtgtc 132  Q
    |||| |||||||||||||||||| |||||||| ||||||| |||||||| ||| |||| |||||    
T  8343029 acaccgacacttgtaattacactaaattatgtgattttttcaaattattagctatgtcggtgtc 8342966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 13436952 - 13437023
Alignment:
Q  55 tcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||||||||| |||| ||||||||| |||||  | |||||||| ||||||| |||||||| ||||||||    
T  13436952 tcgacaccgacacgacaccgacacttgttattaccatgaattatgtgattttttcaaattattagctgtgtc 13437023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 126
Target Start/End: Complemental strand, 22596045 - 22595994
Alignment:
Q  75 acacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||||||||||||| |||||||| ||||||| |||||||| ||||||||    
T  22596045 acacttgtaattacactgaattatgttatttttttaaattattagctgtgtc 22595994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 126
Target Start/End: Complemental strand, 44694842 - 44694791
Alignment:
Q  75 acacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||||||||||||| || |||||||| |||||||||||||||| ||||||||    
T  44694842 acacttgtaattacgcttaattatgtgattttttaaaattatttgctgtgtc 44694791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 117
Target Start/End: Complemental strand, 7442920 - 7442854
Alignment:
Q  51 gtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattatt 117  Q
    |||| |||||| || |||||||  ||||||||||||||||| |||||||||||||| | ||||||||    
T  7442920 gtgtccgacactgatacaacaccaacacttgtaattacactgaattatgtaattttatgaaattatt 7442854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 4948709 - 4948661
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattatt 117  Q
    |||| |||||||||||||||||| |||||||| ||||||| ||||||||    
T  4948709 acaccgacacttgtaattacactgaattatgtgattttttcaaattatt 4948661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 18407771 - 18407719
Alignment:
Q  74 gacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||||||||||||||||| |||||||| |||||||  ||||||| ||||||||    
T  18407771 gacacttgtaattacactgaattatgtgatttttttgaattattagctgtgtc 18407719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 20873126 - 20873078
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattatt 117  Q
    |||| |||||||||||||||||| |||||||| ||||||| ||||||||    
T  20873126 acaccgacacttgtaattacactaaattatgtgattttttcaaattatt 20873078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 24205756 - 24205824
Alignment:
Q  5 cacggacactcctcgaattaagcgtgttccgatg-gacacatgtgtcgtgttcgacaccgacacaacac 72  Q
    ||||||||||||||| |||| |||||||||| ||  | ||||| || ||||||||||||||||||||||    
T  24205756 cacggacactcctcggattaggcgtgttccggtgtcagacatgcgttgtgttcgacaccgacacaacac 24205824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 126
Target Start/End: Original strand, 29447090 - 29447169
Alignment:
Q  47 tgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||||||| |||||||||||  |||| |||||||||| ||||| | |||||||| ||||| | |||||||| | ||||||    
T  29447090 tgtcgtgtccgacaccgacatgacaccgacacttgtagttacattgaattatgtgattttctcaaattattagttgtgtc 29447169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 63 - 126
Target Start/End: Original strand, 30271287 - 30271350
Alignment:
Q  63 gacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||| |||||| ||||||||||||||||  ||||||| ||||||| |||| ||| ||||||||    
T  30271287 gacacgacactggcacttgtaattacactgcattatgtgattttttcaaatgattagctgtgtc 30271350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 131
Target Start/End: Complemental strand, 24613577 - 24613516
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtccgtgt 131  Q
    |||| |||||||||||||||||| |||||||| | ||||| |||||||| |||||||| ||||    
T  24613577 acaccgacacttgtaattacacttaattatgtga-tttttcaaattattagctgtgtcggtgt 24613516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 24727731 - 24727793
Alignment:
Q  46 gtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaatttttt 108  Q
    ||||| ||||||| |||||||  ||||| ||||||| |||||||||  |||||||||||||||    
T  24727731 gtgtcatgttcgataccgacatgacactaacacttgaaattacactgcattatgtaatttttt 24727793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 4298888 - 4298945
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||| |||||||||||||||| | |||||||| ||||||| ||||||||  |||||||    
T  4298888 acaccgacacttgtaattacattaaattatgtgattttttcaaattattaactgtgtc 4298945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 30077389 - 30077442
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctg 122  Q
    |||| |||||||||||||||||| |||||||| || |||| |||||||| ||||    
T  30077389 acacggacacttgtaattacactgaattatgtgatgttttcaaattattagctg 30077442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 24669490 - 24669454
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattt 105  Q
    |||| |||||||||||||||||| |||||||||||||    
T  24669490 acaccgacacttgtaattacactgaattatgtaattt 24669454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 28745578 - 28745498
Alignment:
Q  46 gtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||||| |||||||||||| |||  |||| ||||| ||||| | |||||||| | ||||| |||||||| || |||||    
T  28745578 gtgtcgtgtccgacaccgacacgacatcgacatttgtagttacattgaattatgtgaatttttcaaattattagcagtgtc 28745498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 92937 - 92807
Alignment:
Q  1 gaagcacggacactcctcgaattaagcgtgttccgatggac-acatgtgtcgtgttcga----caccgacacaacactgacacttgtaattacactcaat 95  Q
    ||||||||||||||||||| |||| |||||| | | ||  | ||||||||||||| |||    |||| |||||| ||||||||||||||||||||| |||    
T  92937 gaagcacggacactcctcggattaggcgtgtccaggtgtccgacatgtgtcgtgtccgacacccaccaacacaaaactgacacttgtaattacactgaat 92838  T
Q  96 tatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||||||| | |||||||| || |||||    
T  92837 tatgtaattttctcaaattattagcggtgtc 92807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 3052 - 2946
Alignment:
Q  3 agcacggacactcctcgaattaagcgtgttccgatg--gacacatgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgt 100  Q
    ||||||||||||||||| |||| |||||||||| ||  || ||| |||||||||  || |||||||| ||||||| ||||||||||||||| ||||||||    
T  3052 agcacggacactcctcggattaggcgtgttccggtgtcga-acacgtgtcgtgtctgataccgacacgacactgatacttgtaattacactaaattatgt 2954  T
Q  101 aatttttt 108  Q
     |||||||    
T  2953 gatttttt 2946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 11223797 - 11223922
Alignment:
Q  1 gaagcacggacactcctcgaattaagcgtgttccgatgg-acacatgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatg 99  Q
    ||||||||||||||||||  |||| |||||| ||| ||  | ||| ||||||||| ||||||| |||  |||| |||||||||||||||||| |||||||    
T  11223797 gaagcacggacactcctcagattaggcgtgtcccggtgtcagaca-gtgtcgtgtccgacacctacatgacaccgacacttgtaattacactgaattatg 11223895  T
Q  100 taattttttaaaattattggctgtgtc 126  Q
    | ||||||| ||| |||| ||||||||    
T  11223896 ttattttttcaaaatattagctgtgtc 11223922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 21374705 - 21374758
Alignment:
Q  73 tgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||||||||||||||| |||||||||||||||| |||||||| ||||||||    
T  21374705 tgacacttgtaattacactgaattatgtaattttttcaaattattagctgtgtc 21374758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 6940307 - 6940255
Alignment:
Q  74 gacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||||||||||||||||| |||||||||| |||||||||||||| ||||||||    
T  6940307 gacacttgtaattacacttaattatgtaactttttaaaattattagctgtgtc 6940255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 30717509 - 30717589
Alignment:
Q  46 gtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||||| ||||| |||||| |||  |||||||||||||||||| |||||||| ||||||| |||||||| ||| ||||    
T  30717509 gtgtcgtgtccgacaacgacacgacatcgacacttgtaattacactgaattatgtgattttttcaaattattagctttgtc 30717589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 37419869 - 37419752
Alignment:
Q  1 gaagcacggacactcctcgaattaagcgtgttccgatg---gacacatgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaatta 97  Q
    ||||||||||||||||||| |||| |||||| ||| ||   |||||  |  |||||| |||||||||||| |||| | |||||||||||||||| ||||     
T  37419869 gaagcacggacactcctcggattaggcgtgtcccggtgtcggacac--gcatcgtgtccgacaccgacacgacaccggcacttgtaattacactgaattt 37419772  T
Q  98 tgtaattttttaaaattatt 117  Q
    ||| ||||||| ||||||||    
T  37419771 tgtgattttttcaaattatt 37419752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 2438721 - 2438778
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||| |||||||||||||||||| |||||||| ||||||| |||||||| ||||||||    
T  2438721 acaccgacacttgtaattacactgaattatgtgattttttgaaattattagctgtgtc 2438778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 18841015 - 18841072
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||| |||||||||||||||||| |||||||||||||||| |||||||| | ||||||    
T  18841015 acaccgacacttgtaattacacttaattatgtaattttttcaaattattagttgtgtc 18841072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 44860446 - 44860314
Alignment:
Q  1 gaagcacggacactcctcgaattaagcgtgttccgat---ggacacatgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaatta 97  Q
    |||||||||||||||||||||||| | |||| |||||   |||||||  |||||||| | ||||| |||| |||| ||||| | |||||||||| |||||    
T  44860446 gaagcacggacactcctcgaattaggtgtgtcccgatgtcggacaca--tgtcgtgtccaacaccaacacgacaccgacacatataattacactgaatta 44860349  T
Q  98 tgtaattttttaaaattattggctgtgtccgtgtc 132  Q
    ||  ||||| | |||||||| || ||||| |||||    
T  44860348 tgcgattttctcaaattattagcggtgtcagtgtc 44860314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 42 - 126
Target Start/End: Original strand, 36756319 - 36756403
Alignment:
Q  42 acatgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||||||| |||||||||||  |||| |||| ||||||| |||||||||| |||||||| |||| || |||||||| | ||||||    
T  36756319 acatgtgttgtgttcgacactaacacgacaccgacacttataattacactgaattatgttatttcttcaaattattagttgtgtc 36756403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 21624324 - 21624266
Alignment:
Q  69 acactgacacttgtaattacactcaattatg-taattttttaaaattattggctgtgtc 126  Q
    |||| |||||||||||||||||| ||||||| || ||||||||||||||| ||||||||    
T  21624324 acaccgacacttgtaattacactgaattatgctatttttttaaaattattagctgtgtc 21624266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 227
Target Start/End: Original strand, 23053503 - 23053576
Alignment:
Q  153 cagggcatagaggggggagatcataagtgtctatactgtaaaattgattttcgtaggaatgaaatagacatatat 227  Q
    |||||||||||||| | || ||||||| |||||||| |||||||||||||||   ||||||||| ||||||||||    
T  23053503 cagggcatagagggag-aggtcataagcgtctataccgtaaaattgattttctacggaatgaaaaagacatatat 23053576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 19614266 - 19614213
Alignment:
Q  43 catgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaatt 96  Q
    ||||||||||||||||||||||||| | |||||||| | |||||||||| ||||    
T  19614266 catgtgtcgtgttcgacaccgacacgatactgacacatataattacactgaatt 19614213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 20539676 - 20539733
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||| |||||||||||||||||| |||||| | ||||||| |||||||| ||||||||    
T  20539676 acaccgacacttgtaattacactaaattatatgattttttcaaattattagctgtgtc 20539733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 39323317 - 39323264
Alignment:
Q  73 tgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||||||||||||||| |||||||||||||| | |||||||| || |||||    
T  39323317 tgacacttgtaattacactgaattatgtaattttgtcaaattattagcggtgtc 39323264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 15972930 - 15972882
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattatt 117  Q
    |||| |||||||||||||||||| |||| ||||||||||| ||||||||    
T  15972930 acaccgacacttgtaattacactgaattgtgtaattttttcaaattatt 15972882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 113
Target Start/End: Original strand, 4882671 - 4882742
Alignment:
Q  42 acatgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaat 113  Q
    |||||| ||||||  ||||||||||| |||  |||||||||||||||||| |||||| | ||||||| ||||    
T  4882671 acatgtatcgtgtctgacaccgacacgacatcgacacttgtaattacactgaattatatcattttttcaaat 4882742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 117
Target Start/End: Original strand, 30404857 - 30404900
Alignment:
Q  74 gacacttgtaattacactcaattatgtaattttttaaaattatt 117  Q
    |||||||||||||||||| |||||||| ||||||| ||||||||    
T  30404857 gacacttgtaattacactgaattatgtgattttttcaaattatt 30404900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 113
Target Start/End: Complemental strand, 33153488 - 33153437
Alignment:
Q  62 cgacacaacactgacacttgtaattacactcaattatgtaattttttaaaat 113  Q
    |||||| |||| |||||||||||||||||| |||||||| ||||||| ||||    
T  33153488 cgacacgacacggacacttgtaattacactgaattatgtgatttttttaaat 33153437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 131
Target Start/End: Complemental strand, 21091780 - 21091718
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtccgtgt 131  Q
    ||||||||||||||||||||||| || ||||| ||||| | |||||||| || ||||| ||||    
T  21091780 acactgacacttgtaattacactgaagtatgttattttcttaaattattagcggtgtcggtgt 21091718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 23058433 - 23058483
Alignment:
Q  58 acaccgacacaacactgacacttgtaattacactcaattatgtaatttttt 108  Q
    |||||||||| |||| ||||||||||||||||||  ||||||| |||||||    
T  23058433 acaccgacacgacaccgacacttgtaattacactggattatgtgatttttt 23058483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 30335474 - 30335417
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||| |||| ||||||||||||| |||||||| ||||||| |||||||| | ||||||    
T  30335474 acaccgacatttgtaattacactaaattatgtcattttttcaaattattagttgtgtc 30335417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 37559034 - 37558977
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||| |||||||||||||||| | |||||||| ||||||  |||||||| ||||||||    
T  37559034 acaccgacacttgtaattacattgaattatgtgatttttacaaattattagctgtgtc 37558977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 117
Target Start/End: Original strand, 2665869 - 2665938
Alignment:
Q  46 gtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattatt 117  Q
    |||| |||||| |||||||||||||||   ||| | |||||||||| |||||||| ||||| ||||||||||    
T  2665869 gtgttgtgttcaacaccgacacaacac--ccacatataattacactaaattatgtgattttctaaaattatt 2665938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 18422020 - 18421972
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattatt 117  Q
    |||| |||||||||||||||||| |||||||| || |||| ||||||||    
T  18422020 acaccgacacttgtaattacactgaattatgtgatatttttaaattatt 18421972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 31808136 - 31808072
Alignment:
Q  67 caacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtccgtgt 131  Q
    |||||||||||| | |||||||||| |||||||| ||||| | |||||||| || ||||| ||||    
T  31808136 caacactgacacatataattacactgaattatgtgattttgttaaattattagcggtgtcggtgt 31808072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 35056948 - 35056896
Alignment:
Q  46 gtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattat 98  Q
    ||||||||| |||||||||||| |||| ||||| | |||||||||| ||||||    
T  35056948 gtgtcgtgtccgacaccgacacgacaccgacacatataattacactgaattat 35056896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 38 - 131
Target Start/End: Complemental strand, 24112 - 24020
Alignment:
Q  38 ggacacatgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtccgtgt 131  Q
    ||||||| |||| |||| |||||||||||| ||||||| ||| ||||||||||| |||||||  |||||| ||||||||| |||||||| ||||    
T  24112 ggacacacgtgttgtgtccgacaccgacacgacactgaaact-gtaattacactaaattatgagatttttgaaaattattagctgtgtcggtgt 24020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1528 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 131
Target Start/End: Complemental strand, 1103 - 1030
Alignment:
Q  58 acaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtccgtgt 131  Q
    |||||||||| |||||||||| | || ||||||| |||||||||||||||| |||||||| || ||||| ||||    
T  1103 acaccgacaccacactgacacatatagttacactgaattatgtaattttttcaaattattagcggtgtcggtgt 1030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0722 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0722
Description:

Target: scaffold0722; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 126
Target Start/End: Original strand, 7040 - 7091
Alignment:
Q  75 acacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||||||||| ||| |||||||||||||||| |||||||| ||||||||    
T  7040 acacttgtaattatactaaattatgtaattttttcaaattattagctgtgtc 7091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 23588 - 23529
Alignment:
Q  49 tcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaatttttt 108  Q
    |||||| ||||||||| || |||||||||||| |||||||||| |||||||| |||||||    
T  23588 tcgtgtccgacaccgaaacgacactgacacttataattacactgaattatgtgatttttt 23529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 126
Target Start/End: Complemental strand, 51862 - 51811
Alignment:
Q  75 acacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||||||||||||| |||||||| ||||||| |||||||| ||||||||    
T  51862 acacttgtaattacactgaattatgtgattttttcaaattattagctgtgtc 51811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 71805 - 71723
Alignment:
Q  46 gtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaa--ttttttaaaattattggctgtgtc 126  Q
    |||| |||| |||||||||||| ||||||||||| ||||||||||| |||| ||| |  |||||| |||||||| ||||||||    
T  71805 gtgttgtgtccgacaccgacacgacactgacactagtaattacactgaattgtgtgattttttttcaaattattagctgtgtc 71723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 117
Target Start/End: Original strand, 263351 - 263422
Alignment:
Q  46 gtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattatt 117  Q
    |||||||||  ||||||||||| |||||||||||| |||||||||| ||||||||  |||| | ||||||||    
T  263351 gtgtcgtgtctgacaccgacacgacactgacacttataattacactgaattatgtggttttctcaaattatt 263422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 120
Target Start/End: Complemental strand, 53260 - 53186
Alignment:
Q  46 gtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaattattggc 120  Q
    ||||| ||| ||||||||||||  ||| ||||||| |||||||||| |||||||| ||||| | |||||||||||    
T  53260 gtgtcatgtccgacaccgacacggcaccgacacttataattacactgaattatgtgattttctcaaattattggc 53186  T

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Target: scaffold0036 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 9680 - 9797
Alignment:
Q  1 gaagcacggacactcctcgaattaagcgtgttccgatg-gacacatgtgtcgtgttcgacaccgacacaacactgacacttgtaattacactcaattatg 99  Q
    ||||||||||||||||||| ||||  ||||| ||||||  | ||| |||||||||  |||||| |||| |||| ||||| | |||||||||| ||||| |    
T  9680 gaagcacggacactcctcggattatacgtgtcccgatgtcagacaagtgtcgtgtctgacaccaacacgacaccgacacatataattacactgaattaag 9779  T
Q  100 taattttttaaaattatt 117  Q
    | ||||| | ||||||||    
T  9780 tgattttctcaaattatt 9797  T

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Target: scaffold0011 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 17751 - 17808
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||| |||||||||||||||||| |||||||| ||||||| |||||||| | ||||||    
T  17751 acaccgacacttgtaattacactaaattatgtgattttttcaaattattagttgtgtc 17808  T

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Target: scaffold0066 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 126
Target Start/End: Original strand, 33375 - 33422
Alignment:
Q  79 ttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    ||||||||||||| |||||||| ||||||| |||||||| ||||||||    
T  33375 ttgtaattacactgaattatgttattttttcaaattattagctgtgtc 33422  T

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Target: scaffold0361 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 126
Target Start/End: Complemental strand, 14580 - 14530
Alignment:
Q  76 cacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||||||||||||||| |||||||| ||||||| |||||||| | ||||||    
T  14580 cacttgtaattacactgaattatgtgattttttcaaattattagttgtgtc 14530  T

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Target: scaffold0018 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 178820 - 178878
Alignment:
Q  69 acactgacacttgtaattacactcaattatg-taattttttaaaattattggctgtgtc 126  Q
    ||||||||||||||||||||||| ||||||| | ||||||| |||||||| | ||||||    
T  178820 acactgacacttgtaattacactgaattatgatgattttttcaaattattagttgtgtc 178878  T

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Target: scaffold0793 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 4891 - 4948
Alignment:
Q  75 acacttgtaattacactcaattatgt-aattttttaaaattattggctgtgtccgtgt 131  Q
    ||||||||||||||||| |||||||| | |||||| |||||||| |||||||| ||||    
T  4891 acacttgtaattacactgaattatgtgattttttttaaattattagctgtgtcggtgt 4948  T

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Target: scaffold0652 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 464 - 521
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||| |||||||||||||||||| |||| ||| ||||||| |||||||| || |||||    
T  464 acaccgacacttgtaattacactgaattttgtgattttttcaaattattagcagtgtc 521  T

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Target: scaffold0053 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 8855 - 8798
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||| |||||||||||||||||| ||| || | ||||||| |||||||| ||||||||    
T  8855 acaccgacacttgtaattacactaaataatatgattttttcaaattattagctgtgtc 8798  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 46739 - 46682
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||| |||| ||||||||||||| |||||||| ||||||| ||||||||  |||||||    
T  46739 acaccgacatttgtaattacactgaattatgtgattttttcaaattattaactgtgtc 46682  T

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Target: scaffold1300 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1300
Description:

Target: scaffold1300; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 650 - 586
Alignment:
Q  51 gtgttcgacaccgacacaacactgacacttgtaattacactcaattatgtaattttttaaaatta 115  Q
    ||||||||||| ||||| |||||||||  | |||||||||  |||||||| ||||||| ||||||    
T  650 gtgttcgacactgacacgacactgacatatataattacacataattatgtgatttttttaaatta 586  T

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Target: scaffold0049 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 63830 - 63782
Alignment:
Q  69 acactgacacttgtaattacactcaattatgtaattttttaaaattatt 117  Q
    |||| ||||||||||||| |||| |||||||||||||| | ||||||||    
T  63830 acaccgacacttgtaattgcactgaattatgtaattttctcaaattatt 63782  T

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Target: scaffold0025 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 23832 - 23788
Alignment:
Q  64 acacaacactgacacttgtaattacactcaattatgtaatttttt 108  Q
    |||| |||| |||||||||||||||||| |||||||| |||||||    
T  23832 acacgacaccgacacttgtaattacactgaattatgtgatttttt 23788  T

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Target: scaffold0021 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 130534 - 130482
Alignment:
Q  74 gacacttgtaattacactcaattatgtaattttttaaaattattggctgtgtc 126  Q
    |||||||||||||||||| |||||||| ||||||| ||| ||||  |||||||    
T  130534 gacacttgtaattacactgaattatgtgattttttcaaactattaactgtgtc 130482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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