View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11713_low_1 (Length: 491)
Name: NF11713_low_1
Description: NF11713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11713_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Complemental strand, 5219387 - 5218914
Alignment:
| Q |
1 |
caccatcagtgcattatagcataataacaaggatacataaaaggaaaatcttaatgctaggttttataggacttacatgcgacactctacgctctattgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5219387 |
caccatcagtgcattatagcataataacaaggatacataaaaggaaaatcttaatgctaggttttataggacttacatgcgacactctacgctctattgc |
5219288 |
T |
|
| Q |
101 |
agctattatgcataagataagcttttccctctcactttgggttctgagagctaaaccattccacttgtgccttatatagtactcctgcaagacacggatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5219287 |
agctattatgcataagataagcttttccctctcactttgggttctgagagctaaaccattccacttgtgccttatatagtactcctgcaagacacggatc |
5219188 |
T |
|
| Q |
201 |
aatgtaattaatgacggattcattgtatattatagtttgacttcaactcaactttattataaaatcaacttgtaaagtgacgatgaagtacctgatcggc |
300 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5219187 |
aatgtaattaatgacggattcatcgtatattatagtttgacttcaactcaactttattataaaatcaacttgtaaagtgacgatgaagtacctgatcggc |
5219088 |
T |
|
| Q |
301 |
tatggatttcttggaactaatggcagcatgaaagactacatactgcatgtccctaagcacacacaccgtatcaaaaaacaacttgggacggtccctacac |
400 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5219087 |
tatggatttcttggaactaatggcggcatgaaagactacatactgcatgtccctaagcacacacaccgtatcaaaaaacaacttgggacggtccctacac |
5218988 |
T |
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| Q |
401 |
accaagttcaccacccaataccccctgtccttgcatctactaatagacacatgagtcccatcacaccccttttt |
474 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5218987 |
accaagttcaccacccaataccccctgtccttgcatctactaatagacacatgagtcccatcacaccccttttt |
5218914 |
T |
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