View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11713_low_6 (Length: 370)
Name: NF11713_low_6
Description: NF11713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11713_low_6 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 28612973 - 28612601
Alignment:
| Q |
1 |
ttaactgtttcaaacttagatgccctcaaccttcttgtaatgcagctgttgatcaagacatgattcatcaacttgcaagtaagtcaagaaagattaaata |
100 |
Q |
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| T |
28612973 |
ttaactgtttcaaacttagatgccctcaaccttcttgtaatgcagctgttgatcaagacatgattcatcaacttgcaagtaagtcaagaaagattaaata |
28612874 |
T |
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| Q |
101 |
tgatcaatttttctttcggtcttacgtggaaaacaacagtgataggaaattgaagtggtgtcctgctccaaattgttgtt---atgctataagtcatgat |
197 |
Q |
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| T |
28612873 |
tgatcaatttttctttcggtcttacgtggaaaacaacagtgataggaaattgaagtggtgtcctgctccaaattgttgttgttatgctataagtcatgat |
28612774 |
T |
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| Q |
198 |
caattattatcagagtctagccctagatttaataatgatgttacatgtcattgttatcatagcttttgttggaattgtggtgaagacgctcatacacccg |
297 |
Q |
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| T |
28612773 |
caattattatcagagtctagccctagatttaataatgatgttacatgtcattgttatcatagcttttgttggaattgtggtgaagaagctcatacacccg |
28612674 |
T |
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| Q |
298 |
tggattgtgaaacttttgttaaatggaggagaaagataagttctgattctgaggttacaaataatagtcggat |
370 |
Q |
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| T |
28612673 |
tggattgtgaaacttttgttaaatggaggagaaagattagttctgattctgaggttacaaataatagttggat |
28612601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 2 - 324
Target Start/End: Complemental strand, 28604237 - 28603909
Alignment:
| Q |
2 |
taactgtttcaaacttagatgccctcaaccttcttgtaatgcagctgttgatcaagacatgattcatcaacttgcaagtaagtcaagaaagattaaatat |
101 |
Q |
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| T |
28604237 |
taactgcttcaaactcaaatgccctgagccttcttgtaatgcagctgtagatgaagacatgattcaacaattagcaagtgagtcaagaaagattaaatac |
28604138 |
T |
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| Q |
102 |
gatcaatttttctttcggtcttacgtggaaaacaacagtgataggaaattgaagtggtgtcctgctccaaattgttgttatgctataagtcatga--tca |
199 |
Q |
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| T |
28604137 |
gatcaatttttctttcgttcttatgttgaaaacaacaataacatgaaattgaagtggtgtcctgctccagattgttgtaatgctataagttatgaattac |
28604038 |
T |
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| Q |
200 |
attattatcagagt----ctagccctagatttaataatgatgttacatgtcattgttatcatagcttttgttggaattgtggtgaagacgctcatacacc |
295 |
Q |
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| T |
28604037 |
catatcatcacggttcaagtagttctagaataaattatgatgttacatgtctttgttatcatagcttttgttggaattgtggtgaagaagctcacacacc |
28603938 |
T |
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| Q |
296 |
cgtggattgtgaaacttttgttaaatgga |
324 |
Q |
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| T |
28603937 |
tgttgattgtgaaattgttgctaaatgga |
28603909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 233 - 324
Target Start/End: Complemental strand, 28602601 - 28602510
Alignment:
| Q |
233 |
tgatgttacatgtcattgttatcatagcttttgttggaattgtggtgaagacgctcatacacccgtggattgtgaaacttttgttaaatgga |
324 |
Q |
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||||||||||||||||||||||||||| ||||||| |||||||| |||||| ||||||||||| ||||||||||||||| ||| |||||||| |
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| T |
28602601 |
tgatgttacatgtcattgttatcatagtttttgttagaattgtgatgaagaagctcatacacctgtggattgtgaaactgttgctaaatgga |
28602510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 232 - 311
Target Start/End: Original strand, 38487310 - 38487389
Alignment:
| Q |
232 |
atgatgttacatgtcattgttatcatagcttttgttggaattgtggtgaagacgctcatacacccgtggattgtgaaact |
311 |
Q |
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| T |
38487310 |
atgatgttgcatgtctttattatcatatcttttgtttgcattgtggtgaagaagctcatacacctgtggattgtgaaact |
38487389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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