View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11713_low_7 (Length: 298)

Name: NF11713_low_7
Description: NF11713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11713_low_7
NF11713_low_7
[»] chr3 (1 HSPs)
chr3 (9-298)||(35134846-35135138)


Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 9 - 298
Target Start/End: Complemental strand, 35135138 - 35134846
Alignment:
Q  9 aatgagatgaatgagaaaaagatggatgcatgcaagatttttacgttttaattttaaataaaatgcagtacataaccaagtggtgatcgaaatgcgtgaa 108  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35135138 aatgaaatgaatgagaaaaagatggatgcatgcaagatttttacgttttaattttaaataaaatgcagtacataaccaagtggtgatcggaatgcgtgaa 35135039  T
Q  109 aag--agaggtcagagaccgtatacggaagaggaccataccatacggcttgtccgacacatccacggattccgccaacttgtggtccctacacaaact-g 205  Q
    |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  35135038 aagagagaggtcagagaccgtatacggaagaggaccataccatacggcttgtccgacacatccacggattccgccaacttgtggtccctacacaaactgg 35134939  T
Q  206 gacccacatggtcctcccatctcataaaatactgtttctgttgtgtatttctagttatagctcttttgtaaatcagttttctcaaccaaacac 298  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35134938 gacccacatggtcctcccatctcattaaatactgtttctgttgtgtatttctagttatagctcttttgtaaatcagttttctcaaccaaacac 35134846  T

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