View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11714_high_10 (Length: 545)
Name: NF11714_high_10
Description: NF11714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11714_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 451; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 18 - 537
Target Start/End: Original strand, 45303272 - 45303788
Alignment:
| Q |
18 |
cttgaaacataacatcaataacaataataacagtgccactttccaacaaaatccaacacctaacaaacaaaaaagcaaagtcttttctaatcagtttttc |
117 |
Q |
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| T |
45303272 |
cttgaaacataacatcaataacaataataacagtgccactttccaacaaaatccaacacctaacaaacaaaaaagcaaagtcttttctaatcagtttttc |
45303371 |
T |
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| Q |
118 |
aagggaagaaactcaataaactggttgggtgcattgattgctgaagctgatatctgtgtctctttgataatgttnnnnnnnnnnnnnnnnnnnncagtgc |
217 |
Q |
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| T |
45303372 |
aagggaagaaactcaataaactggttgggtgcattgattgctgaagctgatatctgtgtctctttgataatgttatgatgatgatgatgat---cagtgc |
45303468 |
T |
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| Q |
218 |
atccatgatctccattccttattgggaaaagttgaagggtttgatcagattcattttgatgagtactactagtatttaagtggataaaagcgttttctct |
317 |
Q |
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| T |
45303469 |
atccatgatctccattccttattgggaaaagttgaagggtttgatcagattcattttgatgagtactactagtatttaagtggataaaagcgttttctct |
45303568 |
T |
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| Q |
318 |
ttctttgtatgtgtgaggtgaaatgaataagttgagttcatgggtcttgatgagttttgggtccataagtctagttgttactgtggttgtggtggacatg |
417 |
Q |
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| T |
45303569 |
ttctttgtatgtgtgaggtgaaatgaataagttgagttcatgggtcttgatgagttttgggtccataagtctagttgttactgtggttgtggtggacatg |
45303668 |
T |
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| Q |
418 |
ctagctgtaggacaagaagaagttaactgcatcatatgccacgtggcattcctttccataaagtttcttctttgctgtaattctgcttcatcgaattgga |
517 |
Q |
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| T |
45303669 |
ctagctgtaggacaagaagaagttaactgcatcatatgccacgtggcattcctttccataaagtttcttctttgctgtaattctgcttcatcgaattgga |
45303768 |
T |
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| Q |
518 |
gccatccatctgcctttgct |
537 |
Q |
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| T |
45303769 |
gccatccatctgcttttgct |
45303788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 437 - 529
Target Start/End: Original strand, 45150590 - 45150682
Alignment:
| Q |
437 |
aagttaactgcatcatatgccacgtggcattcctttccataaagtttcttctttgctgtaattctgcttcatcgaattggagccatccatctg |
529 |
Q |
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| T |
45150590 |
aagttaacagcatcatatgccacatgacattcctttccataaagtttctttcttgctgtagttcagcttcatcaaattggagccgtctatctg |
45150682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 45150267 - 45150317
Alignment:
| Q |
219 |
tccatgatctccattccttattgggaaaagttgaagggtttgatcagattc |
269 |
Q |
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| T |
45150267 |
tccatgacttccattccttattgggaaaagttgaagggtttggtcagattc |
45150317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 421
Target Start/End: Original strand, 45150446 - 45150492
Alignment:
| Q |
375 |
tgggtccataagtctagttgttactgtggttgtggtggacatgctag |
421 |
Q |
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| T |
45150446 |
tgggtccattagtgtagttgttactgtggttgtgatggccatgctag |
45150492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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