View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11714_high_17 (Length: 412)
Name: NF11714_high_17
Description: NF11714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11714_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 19 - 394
Target Start/End: Original strand, 47874631 - 47875006
Alignment:
| Q |
19 |
gagaaaccaaaaataaccctctcaggtaggtaatctctcaaatcaacattgtatgagaggtgactatatgaaggctcaccattggttatgttttcagtga |
118 |
Q |
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| T |
47874631 |
gagaaaccaaaaataaccctctcaggtaggtaatctctcaaatcaacattgtatgagaggtgactatatgaaggctcaccattggttatgttttcagtga |
47874730 |
T |
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| Q |
119 |
tagaaactttcaaatcatgagcactggaattatactcaattttgcaatgataagccttcttatttctaatatccataaaccatggtttagttatattaga |
218 |
Q |
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| T |
47874731 |
aagaaactttcaaatcatgagcactggaattatactcaattttgcaatgataagccttcttatttctaatatccataaaccatggtttagttatattaga |
47874830 |
T |
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| Q |
219 |
cctcagagaattgaaatttatacctacatgagtgcctggtggatcccaatcattttggtgagtgtcaaactccactgctacaaatgaatatccattagaa |
318 |
Q |
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| T |
47874831 |
cctcagagaattgaaatttatacctacatgagtgcctggtggatcccaatcattttggtgagtgtcaaactccactgctacaaatgaatatccattagaa |
47874930 |
T |
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| Q |
319 |
ttcaatatttggtaatcattcacaagaccaagaccacctccttgtcttatatggtaataaagtggaagtcttggat |
394 |
Q |
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| T |
47874931 |
ttcaatatttggtaatcattcacaagaccaagaccacctccttgtcttatatggtaataaagtggaagtcttggat |
47875006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 25 - 361
Target Start/End: Complemental strand, 47870893 - 47870554
Alignment:
| Q |
25 |
ccaaaaataaccctctcaggtaggtaatctctcaaatcaacattgtatgagaggtgactatatgaaggctcaccattggttatgttttcagtgatagaaa |
124 |
Q |
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| T |
47870893 |
ccaaaaataaccctctcaggtaggtaatctctcaaatcaacattatatgagaggtaagtttttacaggcttatcattgactatgtttccagtgaaagaaa |
47870794 |
T |
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| Q |
125 |
ctttcaaatcatgagcactggaattatactcaattttgcaatgataa---gccttcttatttctaatatccataaaccatggtttagttatattagacct |
221 |
Q |
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|||||||| || |||||| ||||| |||| |||||| |||| |||| | |||||||| |||||||| || ||||||||||||||| | | |||| |
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| T |
47870793 |
ctttcaaagtataagcacttgaattgtactgaattttacaataataataagttttcttattcctaatatcaatcaaccatggtttagttttctgagacac |
47870694 |
T |
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| Q |
222 |
cagagaattgaaatttatacctacatgagtgcctggtggatcccaatcattttggtgagtgtcaaactccactgctacaaatgaatatccattagaattc |
321 |
Q |
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| T |
47870693 |
catagagttgaaatttatacctacatgtatgccgtatggatcccaaccattttggtgtgtgtcaaactccactgctaaaaatgaatgttctgtagaattc |
47870594 |
T |
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| Q |
322 |
aatatttggtaatcattcacaagaccaagaccacctcctt |
361 |
Q |
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| T |
47870593 |
aatatttgatatttatccacaagaccaagaccaccgcctt |
47870554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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