View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11714_high_23 (Length: 357)

Name: NF11714_high_23
Description: NF11714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11714_high_23
NF11714_high_23
[»] chr8 (1 HSPs)
chr8 (18-302)||(30038194-30038480)


Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 30038480 - 30038194
Alignment:
Q  18 gatttttctctcgcgatgtaaagcattttccttgccatttttctatttcttttcctccaaattttatggtattgttataattttgtttattaaaacaagc 117  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||     
T  30038480 gatttttctctcgcgatgtaaaccattttccttgccatttttctatttcttttcctccaaattttatggtatttttataattttgtttaataaaacaaga 30038381  T
Q  118 gagcctaccaagtttgatatattccttgttcactagatcctcaactaggagccattggaagtatagttccagacaaaaacacaagtttttctgtcttgtg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||| | |||||||||||||||    
T  30038380 gagcctaccaagtttgatatattccttgttcactagatcctcaactaggagcc--tggaagtatagttccggacaaaaacactaatttttctgtcttgtg 30038283  T
Q  218 tggtttt-ttagaaacctaagatgaaaaaag---ctttcctaacttgtaagacttagttagatgttgtcccgttccctttgccttgtag 302  Q
    ||||||| |||||||||||||||| ||||||   ||  | |||||||||||||||||||||| ||||||| ||||||||||| ||||||    
T  30038282 tggttttgttagaaacctaagatggaaaaagaagctcacataacttgtaagacttagttagacgttgtccggttccctttgcgttgtag 30038194  T

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