View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11714_high_32 (Length: 295)
Name: NF11714_high_32
Description: NF11714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11714_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 42205473 - 42205189
Alignment:
| Q |
1 |
tattgttgattttatatctatgttagacatttgtcatgactcatactcaatttagtttattgtgcatcaacttctaacttttctaattaagaatatacac |
100 |
Q |
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| T |
42205473 |
tattgttgattttatatctatgttagacatttgtcatgactcatactcaatttagtttattgtgcatcaacttctaacttttctaattaagaatatacac |
42205374 |
T |
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| Q |
101 |
ttttgtagtttttgcaaaaagtgtttgcaatcttccatatatatggctggacaaaggtgccctttatgcaaggaatggataaggtattcatgaagtaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205373 |
ttttgtagtttttgcaaaaagtgtttgcaatcttccatatatatggctggacaaaggtgccctttatgcaaggaatggataaggtattcatgaagtaatt |
42205274 |
T |
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| Q |
201 |
aatttttcaaaatcaaatatgtattgttgtcttttgactttgttatgttttttccttttgcagtaatagattcccctactctgtg |
285 |
Q |
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| T |
42205273 |
aatttttcaaaatcaaatatgtattgttgtcttttgactttgttatgttttttccttttgcagtaatagattcccctactctgtg |
42205189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 42214341 - 42214057
Alignment:
| Q |
1 |
tattgttgattttatatctatgttagacatttgtcatgactcatactcaatttagtttattgtgcatcaacttctaacttttctaattaagaatatacac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214341 |
tattgttgattttatatctatgttagacatttgtcatgactcatactcaatttagtttattgtgcatcaacttctaacttttctaattaagaatatacac |
42214242 |
T |
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| Q |
101 |
ttttgtagtttttgcaaaaagtgtttgcaatcttccatatatatggctggacaaaggtgccctttatgcaaggaatggataaggtattcatgaagtaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214241 |
ttttgtagtttttgcaaaaagtgtttgcaatcttccatatatatggctggacaaaggtgccctttatgcaaggaatggataaggtattcatgaagtaatt |
42214142 |
T |
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| Q |
201 |
aatttttcaaaatcaaatatgtattgttgtcttttgactttgttatgttttttccttttgcagtaatagattcccctactctgtg |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214141 |
aatttttcaaaatcaaatatgtattgttgtcttttgactttgttatgttttttccttttgcagtaatagattcccctactctgtg |
42214057 |
T |
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