View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11714_high_48 (Length: 230)
Name: NF11714_high_48
Description: NF11714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11714_high_48 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 32282185 - 32281987
Alignment:
| Q |
18 |
accaacaccatgatttacaaaattagtcgccgcgccttcaacatagtccaagccgacggcactattcccatgacctacaaagctgtaacttaccatactc |
117 |
Q |
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|||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32282185 |
accaacaccatgatttacaaaattagtctcggcgccttcaacatagtccaagccgacagcactattcccatgacctacaaagctgtaacttaccatactc |
32282086 |
T |
|
| Q |
118 |
caatagttatttctctactggaatcttaccctcgtcaccctcctctagtctatcttaaccctccaccatatttaaaaatcaaactccatcatccctatg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
32282085 |
caatagttatttctctactggaatcttaccctcgtcaccctcctctagtctatcttaaccctccaccatatttgaaaatcaaactccatcatccttatg |
32281987 |
T |
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