View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11714_low_10 (Length: 549)
Name: NF11714_low_10
Description: NF11714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11714_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 25 - 527
Target Start/End: Original strand, 34956511 - 34957013
Alignment:
| Q |
25 |
gtaaactcaaaaatattataaactaaggtgacgtttagagtacacaagggtatgtttttgtgtagcatacacaagtataagagttacaaagaattagtct |
124 |
Q |
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| T |
34956511 |
gtaaactcaaaaatattataaattagggtgacgtttagagtacacaagggcatatttttgagtagcatacacaagtataagggttacaaggaattagtct |
34956610 |
T |
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| Q |
125 |
tcaacaatttctttaagaacaaaccctaatttttaactttttgaatgatatttccaaaccctataatctactaaaaagacctcaacctttaacctattga |
224 |
Q |
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| T |
34956611 |
tcaacaatttctttaagaacaaaccctaatttctaactttttgaatggtatttccaaaccctataatctactaaaaagacctcaacctttaacctattga |
34956710 |
T |
|
| Q |
225 |
ttttctaaaagttccctattttgttctctctacagatttgccttttccactctacaaaaccctaaacccaacctgtctatttataggattcgtccggtcc |
324 |
Q |
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| T |
34956711 |
tttcctaaaggttccctattttgttctcactagagattttccttttccactctacaaaaccctaaacccaacctgtctatttataggattcgtccggtcc |
34956810 |
T |
|
| Q |
325 |
ttaaaacttgccgaccnnnnnnntagaaaacttgtgcatgcccgccacgtagccttcatgtgcattgtgtagtatgcacaactcaagcactttcagaatc |
424 |
Q |
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| T |
34956811 |
ttaaaacttgccaaccaaaaaaatagaaaacttgtgcatgcccgccacgtaaccttcatgtgcattgtgtagtatgcacaactcaagcactttcagaatc |
34956910 |
T |
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| Q |
425 |
aaaa-ttttaaggcatatacaacaaaagttcaatcgtgaaccgtaaactttttgcatannnnnnnatattaaagacattttcactaccaccggagtctcg |
523 |
Q |
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| T |
34956911 |
aaaatttttaaggcatatacaacagaagttcaatcgtgaaccgtataatttttgcat-tttttttatattaaagacattttcactaccaccggagtctcg |
34957009 |
T |
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| Q |
524 |
agtc |
527 |
Q |
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| T |
34957010 |
agtc |
34957013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 9177397 - 9177450
Alignment:
| Q |
103 |
aagagttacaaagaattagtcttcaacaatttctttaagaacaaaccctaattt |
156 |
Q |
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| T |
9177397 |
aagagttacaaaaaattagtcttcaacaagttctctaaaaacaaactctaattt |
9177450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 253
Target Start/End: Complemental strand, 31649613 - 31649522
Alignment:
| Q |
164 |
tttgaatgatatttccaaaccctataatctacta--aaaagacctcaacctttaacctattgattttctaaaagttccctattttgttctct |
253 |
Q |
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| T |
31649613 |
tttgaatggtgtttccaaaccctagaatttacctccaaaagtcctcaacctttagcctattgatttcctaatggttccctcttttgttctct |
31649522 |
T |
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