View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11714_low_13 (Length: 501)
Name: NF11714_low_13
Description: NF11714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11714_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 84 - 493
Target Start/End: Complemental strand, 38882009 - 38881601
Alignment:
| Q |
84 |
cagtgttaatgtgtgagtgagcgaaatagatggaggggagtagcaacaatttataaggaactaaaaacacatgcaagaaataaatgtgagtttaagctta |
183 |
Q |
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| T |
38882009 |
cagtgttaatgtgttagtgagcgaaatagatggaggg-agtggcaacaatttataaggaactaaaaacacatgcaagaaataaatgtgagttta-gctta |
38881912 |
T |
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| Q |
184 |
tcacaacaaacaaaatattccacccgcatatacttccttctaatgcggtgttcagttagcctagtaaaccgactcaaagtaatatataccatatgcgtga |
283 |
Q |
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| T |
38881911 |
ccacaacaaacaaaatattccacccgcatatacttccttctaatgcggtgttcagttaaccaagtgaaccgactcaaagtaatatataccatatgcgtca |
38881812 |
T |
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| Q |
284 |
tatcatggctggtatgatagaatctgggtgactacgccgtgannnnnnncaaaaactacattttatagcttctataaaatcaaatcatcgtaatattcac |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38881811 |
tatcatggctggtatgatagaatctgggtgactacgccgtgattttttttaaaaactacattttatagcttctataaaatcaaatcatcgtaatattcac |
38881712 |
T |
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| Q |
384 |
ataatatatcaccatgatattaaaaatacacgcaatagacactgtttccagaaa-ctctttgtcactttagtgctcttgcgtctatggcatgatgattgt |
482 |
Q |
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|||||||||||||||||| | ||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
38881711 |
ataatatatcaccatgatgtcaaacatacacgcaatagacactgtttccagaaacctctttgtaactttagtgctcttgcgtctatggcatgatgaatgt |
38881612 |
T |
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| Q |
483 |
tgatgtccatc |
493 |
Q |
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| T |
38881611 |
tgatgaccatc |
38881601 |
T |
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