View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11714_low_14 (Length: 487)
Name: NF11714_low_14
Description: NF11714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11714_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 24 - 479
Target Start/End: Original strand, 31246141 - 31246597
Alignment:
| Q |
24 |
ggcgttacccagaaaatattgaagaaatacaggagatgacaacattgagggctgaagctttagcacaaatgggtcgccttaaattgctcatcctgtggaa |
123 |
Q |
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| T |
31246141 |
ggcgttatccagaaaatattgaagaaatacaggggatgacaacattgagaactgaagctttagcacaaatgagtcgccttaaattgctcatgctgtggaa |
31246240 |
T |
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| Q |
124 |
tttgaatttttcaggaaatctcaattttctttctagtcatttggggtatctctgttgggataaatatcctttcacttgtttgccatcaagttttcagccg |
223 |
Q |
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| T |
31246241 |
tttgaatttctcaggaagtctcaattttctttctagtcatttggggtatctctgttgggataaatatcctttcacttgtttgccatcaagtttccagccg |
31246340 |
T |
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| Q |
224 |
gataatcttgttgaactgatactacctcgtagcaacatcaggcaactatgggagggcacaaaggtactataaacatggttatgagcctttgtttttcttt |
323 |
Q |
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| T |
31246341 |
gataaacttgttgaactggtcctacctcgtagcaacatcaggcaactatgggagggcacaaaggtaatataaacatggttatgagcctttgtttatcttt |
31246440 |
T |
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| Q |
324 |
ttctgatgaacacataagaagtgtttatctcttaatattccttctttcactacagtttgttaaataaatgaattaaagtttaaatatgattattaatttt |
423 |
Q |
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| T |
31246441 |
ttctgatgaacacataagaagtgtttatctcttaatattccttctttcactacagttagttaaataaatgaattaaagtttaaatatgattattaatttt |
31246540 |
T |
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| Q |
424 |
tctcttt-catttatcattgtctgcagcctctacataatttgacacatattcatctc |
479 |
Q |
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| T |
31246541 |
tctctttccatttatcattgtctgcagtgtttacataatttgacacatattgatctc |
31246597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 130; Significance: 4e-67; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 59 - 292
Target Start/End: Original strand, 13610230 - 13610463
Alignment:
| Q |
59 |
atgacaacattgagggctgaagctttagcacaaatgggtcgccttaaattgctcatcctgtggaatttgaatttttcaggaaatctcaattttctttcta |
158 |
Q |
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| T |
13610230 |
atgacaacattgagggctgaagctttagcaaagatgactcgccttaaattgctcaagctgcgtgatttgaatttctcaggaagtctcaattttctttcaa |
13610329 |
T |
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| Q |
159 |
gtcatttggggtatctctgttgggataaatatcctttcacttgtttgccatcaagttttcagccggataatcttgttgaactgatactacctcgtagcaa |
258 |
Q |
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| T |
13610330 |
gtgaattggggtatctatattgggaaaaatatcctttcacatgtttgccatcaagttttcagccggataaacttgttgaattgatcctacgttctagcaa |
13610429 |
T |
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| Q |
259 |
catcaggcaactatgggagggcacaaaggtacta |
292 |
Q |
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| T |
13610430 |
catcaggcaactatggaagggaacaaaggtacta |
13610463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 394 - 479
Target Start/End: Original strand, 13614278 - 13614364
Alignment:
| Q |
394 |
aattaaagtttaaatatgattattaatttttctctttc-atttatcattgtctgcagcctctacataatttgacacatattcatctc |
479 |
Q |
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| T |
13614278 |
aattaatgcttaaatatgattattaacctttctctttctactgaccattgtctgcagcctcttcacaatttgacacatattgatctc |
13614364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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