View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11714_low_16 (Length: 442)

Name: NF11714_low_16
Description: NF11714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11714_low_16
NF11714_low_16
[»] chr4 (3 HSPs)
chr4 (167-353)||(54951156-54951344)
chr4 (19-100)||(54950509-54950590)
chr4 (24-100)||(54944793-54944869)
[»] chr7 (1 HSPs)
chr7 (189-229)||(46334697-46334737)


Alignment Details
Target: chr4 (Bit Score: 153; Significance: 6e-81; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 167 - 353
Target Start/End: Original strand, 54951156 - 54951344
Alignment:
Q  167 gttataagccaacaagaaaagtttgtttaccaaacacttttcatttgatcaaataagcttatataagttagttcaataaattattaatctatctaaccac 266  Q
    ||||||||| || ||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  54951156 gttataagctaataagaaaagtttatttagcaaacacttttcatttgatcaaacaagcttatataagttagttcaataaattattaatctatctaaccac 54951255  T
Q  267 aagaatcatcgatt-aactgttgggattttgtattatgatatttt-tctcacttttatatgcccttcgtccgtttcttattcatctcat 353  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  54951256 aagaatcatcgattcaactgttgggattttgtattatgatattttatctcacttttatatgcccttcgtccgtttcttattcatctcat 54951344  T

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Target: chr4; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 54950509 - 54950590
Alignment:
Q  19 agaattgatcatggaattctgcccaaaactgacgatatgcatctttagaaaagaatggatgtatcactatcaatcaaagaat 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  54950509 agaattgatcatggaattctgcccaaaactgacgacatgcatctttagaaaagaatggatgtatcactatcaatcaaagaat 54950590  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 54944793 - 54944869
Alignment:
Q  24 tgatcatggaattctgcccaaaactgacgatatgcatctttagaaaagaatggatgtatcactatcaatcaaagaat 100  Q
    |||| ||||||||||||||||||  || || ||||||||||| |||||| ||| |  ||||||||||||||||||||    
T  54944793 tgattatggaattctgcccaaaaacgatgacatgcatctttacaaaagagtggcttcatcactatcaatcaaagaat 54944869  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 46334737 - 46334697
Alignment:
Q  189 ttgtttaccaaacacttttcatttgatcaaataagcttata 229  Q
    ||||||||||||||| | ||||||||||||| |||||||||    
T  46334737 ttgtttaccaaacacgtctcatttgatcaaacaagcttata 46334697  T

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