View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11714_low_19 (Length: 402)
Name: NF11714_low_19
Description: NF11714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11714_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 718716 - 718348
Alignment:
| Q |
1 |
ttcgtcttaaaagtgaaatctaactactatactacttgataaaaaat-acttacttttactaacatatatacaagaccaacatatatacaagaccaatgt |
99 |
Q |
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| T |
718716 |
ttcgtcttaaaagtaaaatctaactactatactacttgataaaaaattacttacttttactaacatatatac-----------------atgaccaatgt |
718634 |
T |
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| Q |
100 |
ccatgaatattcaatttgttcttgaaaagaataatgtccaactactaataaaaaatgtatgctttgattaattaaaatttactaggtctttacacgcttg |
199 |
Q |
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| T |
718633 |
ccatgaatattcaatttgttcttgaaaagaataatgtccaactactaataaaaaatgtatgctttgattaattaaaatttactaggtctttacacgctag |
718534 |
T |
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| Q |
200 |
tgcaactaaattaactatggacttgttcaatgtcacttgcttataaatagacattatgtttgcattgtgaaatatatcacccttacataaacatatacaa |
299 |
Q |
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| T |
718533 |
tgcaactaaattaactatggacttgttcaatgtcacttgcttataaatagacattatgtttgcattgtgaaatatatcatccttacataaacatatacaa |
718434 |
T |
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| Q |
300 |
gcaaattacacgaataaaatttctnnnnnnnnnncatgaagactacttacttgtttgtgacagccttcttggccttagcatcatgtg |
386 |
Q |
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| T |
718433 |
gcaaattacacgaataaaatttct-aaaaaaaaacatgaagactacttacttgtttgtgacagccttcttggccttagcatcatgtg |
718348 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 36383210 - 36383251
Alignment:
| Q |
6 |
cttaaaagtgaaatctaactactatactacttgataaaaaat |
47 |
Q |
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| T |
36383210 |
cttaaatgtgaattttaactactatactacttgataaaaaat |
36383251 |
T |
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