View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11714_low_2 (Length: 762)

Name: NF11714_low_2
Description: NF11714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11714_low_2
NF11714_low_2
[»] chr7 (8 HSPs)
chr7 (211-626)||(36326269-36326693)
chr7 (16-218)||(36326720-36326922)
chr7 (564-739)||(31853177-31853351)
chr7 (566-646)||(28138759-28138840)
chr7 (696-746)||(36326128-36326178)
chr7 (590-652)||(28139426-28139488)
chr7 (607-652)||(5728181-5728226)
chr7 (615-655)||(2377206-2377246)
[»] chr8 (3 HSPs)
chr8 (676-746)||(31762397-31762467)
chr8 (574-652)||(3588536-3588615)
chr8 (593-636)||(31762867-31762910)
[»] chr5 (4 HSPs)
chr5 (565-644)||(25787840-25787920)
chr5 (590-652)||(40266579-40266641)
chr5 (572-626)||(11135747-11135802)
chr5 (566-638)||(39222979-39223052)
[»] chr3 (2 HSPs)
chr3 (572-626)||(3539674-3539729)
chr3 (566-626)||(26998304-26998365)
[»] chr2 (4 HSPs)
chr2 (566-652)||(12965049-12965136)
chr2 (592-644)||(19984702-19984754)
chr2 (565-638)||(22727661-22727735)
chr2 (588-641)||(38226219-38226272)
[»] chr4 (1 HSPs)
chr4 (572-626)||(54208186-54208241)
[»] chr6 (3 HSPs)
chr6 (565-622)||(1826580-1826638)
chr6 (562-626)||(7203968-7204033)
chr6 (566-626)||(14153354-14153415)
[»] chr1 (1 HSPs)
chr1 (590-652)||(5603152-5603214)


Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 211 - 626
Target Start/End: Complemental strand, 36326693 - 36326269
Alignment:
Q  211 tttattttgatgaattgttttttggcctagtgaatgtgagttgactatggtcgtaagctttaacaattgatgttttcgatgcgaattggaccatatagta 310  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||    
T  36326693 tttattttgatgaattgttttttggccgagtgaatgtgagttgactatggtcataagctttaacaattgatgttttagatgcgaattggatcatatagta 36326594  T
Q  311 tttaagttgaattcttctcgtgagtttaaatctt----aacatagtaacattcctgtatatcggtaatcttttattaggttaatcagttaattgattgcg 406  Q
    ||||||||||| ||||||| |||| ||  |||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  36326593 tttaagttgaactcttctcatgag-ttggatcttaacaaacatagtaacattcctgtatatcggtaatcttttattaggttaatcagttaattgactgct 36326495  T
Q  407 ttactacaattagttaaataaactaaaggc-------attttcaattggtagttagttgacaatttacaagtttgtttctatttatgnnnnnnncttatc 499  Q
    ||||| ||||||||| ||||||||   |||       |||||||||||||| |||||||||||||||||||||||||||||||||||       ||||||    
T  36326494 ttactgcaattagttgaataaactcccggcattttcaattttcaattggtaattagttgacaatttacaagtttgtttctatttatg-ttttttcttatc 36326396  T
Q  500 --aaccgtcttgcatgacattgaggatcaaactaagaaagnnnnnnnntattaacactgaataatgatgaatcctgctctttatccaaata-ttttgctc 596  Q
      |||  ||||||||||||||||||||||||||||||||         ||||||||| |||||||||||||| || |||||||| |||| | ||||| ||    
T  36326395 aaaactatcttgcatgacattgaggatcaaactaagaaa---aaaaaatattaacaccgaataatgatgaattctactctttattcaaacagttttgttc 36326299  T
Q  597 atttccaaaataaatgatcaaaatacccct 626  Q
    ||||||||||||||||||||||||||||||    
T  36326298 atttccaaaataaatgatcaaaatacccct 36326269  T

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Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 36326922 - 36326720
Alignment:
Q  16 agagaccaggtgttattataaaaccaataagagtttgaggaagtgaatgaatcctcataagaagaacattgtgtactactagtattcacaggtggaattg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36326922 agagaccaggtgttattataaaaccaataagagtttgaggaagggaatgaatcctcataagaagaacattgtgtattactagtattcacaggtggaattg 36326823  T
Q  116 ttagttgatttattttaggcttaataaaaatgctatctttaatttatgtttaagcggataaggtagtggcaaagaagaatatgatatcttggacatttat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36326822 ttagttgatttattttaggcttaataaaaatgctatctttaatttatgtttaagcggataaggtagtggcaaagaagaatatgatatcttggacatttat 36326723  T
Q  216 ttt 218  Q
    |||    
T  36326722 ttt 36326720  T

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Target: chr7; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 564 - 739
Target Start/End: Complemental strand, 31853351 - 31853177
Alignment:
Q  564 atgaatcctgctctttatccaaatatttt-gctcatttccaaaataaatgatcaaaatacccctgcgtgaattaactcacgctaatgttatacctcgcgt 662  Q
    |||||| |||||| ||||||||||| ||  ||||||||  ||||||||||| |||||||||  ||||||| ||||||||||||| |||||||  || |||    
T  31853351 atgaattctgctcattatccaaatagttccgctcatttttaaaataaatgaccaaaatacc--tgcgtgagttaactcacgctagtgttataattcacgt 31853254  T
Q  663 gagttaacacacttaaaccaattctctcccaaattgcaattttacgtcgattcatttcacaacaacaactagtaacc 739  Q
    |||||||| ||  |||| ||||||||||||||||| |||||||  ||||||||| ||||||||||||||||||||||    
T  31853253 gagttaactcatgtaaatcaattctctcccaaattacaattttcggtcgattcacttcacaacaacaactagtaacc 31853177  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 566 - 646
Target Start/End: Original strand, 28138759 - 28138840
Alignment:
Q  566 gaatcctgctctttatccaaat-attttgctcatttccaaaataaatgatcaaaatacccctgcgtgaattaactcacgcta 646  Q
    |||| |||||||||| |||||| |||||||||||| ||||| ||||||| |||||||||||||||||| |||||||||||||    
T  28138759 gaattctgctctttacccaaatgattttgctcattcccaaagtaaatgaccaaaatacccctgcgtgacttaactcacgcta 28138840  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 696 - 746
Target Start/End: Complemental strand, 36326178 - 36326128
Alignment:
Q  696 ttgcaattttacgtcgattcatttcacaacaacaactagtaaccttcttcc 746  Q
    ||||||||||  ||||||||| |||||||||||||||||||||||||||||    
T  36326178 ttgcaattttctgtcgattcacttcacaacaacaactagtaaccttcttcc 36326128  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 590 - 652
Target Start/End: Complemental strand, 28139488 - 28139426
Alignment:
Q  590 tttgctcatttccaaaataaatgatcaaaatacccctgcgtgaattaactcacgctaatgtta 652  Q
    ||||| |||| ||||| ||||||| |||||| ||||||||||| ||||||||||||| |||||    
T  28139488 tttgcccattcccaaagtaaatgaccaaaatgcccctgcgtgagttaactcacgctagtgtta 28139426  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 607 - 652
Target Start/End: Original strand, 5728181 - 5728226
Alignment:
Q  607 taaatgatcaaaatacccctgcgtgaattaactcacgctaatgtta 652  Q
    |||||||||||||| ||||||||||| |||| ||||||||||||||    
T  5728181 taaatgatcaaaatgcccctgcgtgagttaattcacgctaatgtta 5728226  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 615 - 655
Target Start/End: Original strand, 2377206 - 2377246
Alignment:
Q  615 caaaatacccctgcgtgaattaactcacgctaatgttatac 655  Q
    |||||||||||||||||| ||||||||||| ||||||||||    
T  2377206 caaaatacccctgcgtgagttaactcacgcaaatgttatac 2377246  T

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Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 676 - 746
Target Start/End: Original strand, 31762397 - 31762467
Alignment:
Q  676 taaaccaattctctcccaaattgcaattttacgtcgattcatttcacaacaacaactagtaaccttcttcc 746  Q
    ||||||||||||| ||||||||||||||||  ||||||||| |||||||||||||||| |||| |||||||    
T  31762397 taaaccaattctcccccaaattgcaattttcggtcgattcacttcacaacaacaactaataactttcttcc 31762467  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 574 - 652
Target Start/End: Complemental strand, 3588615 - 3588536
Alignment:
Q  574 ctctttatccaaat-attttgctcatttccaaaataaatgatcaaaatacccctgcgtgaattaactcacgctaatgtta 652  Q
    ||||||| |||||| | |||||||||| ||||| ||||||| |||||| ||||||||||| ||||||||||||| |||||    
T  3588615 ctctttacccaaatgaatttgctcattcccaaattaaatgaccaaaatgcccctgcgtgagttaactcacgctagtgtta 3588536  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 593 - 636
Target Start/End: Complemental strand, 31762910 - 31762867
Alignment:
Q  593 gctcatttccaaaataaatgatcaaaatacccctgcgtgaatta 636  Q
    ||||||||||||| ||||||| |||||||||||| |||||||||    
T  31762910 gctcatttccaaagtaaatgaacaaaataccccttcgtgaatta 31762867  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 565 - 644
Target Start/End: Complemental strand, 25787920 - 25787840
Alignment:
Q  565 tgaatcctgctctttatccaaatattt-tgctcatttccaaaataaatgatcaaaatacccctgcgtgaattaactcacgc 644  Q
    ||||| ||||||||||||||||   || |||||||||||||||||||||| |||||| ||||||| ||| |||||||||||    
T  25787920 tgaattctgctctttatccaaacggttatgctcatttccaaaataaatgaccaaaatgcccctgcatgagttaactcacgc 25787840  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 590 - 652
Target Start/End: Complemental strand, 40266641 - 40266579
Alignment:
Q  590 tttgctcatttccaaaataaatgatcaaaatacccctgcgtgaattaactcacgctaatgtta 652  Q
    |||||||||| ||||| ||||||| |||||| ||| ||||||| |||||||||||||||||||    
T  40266641 tttgctcattcccaaagtaaatgaccaaaatgcccatgcgtgagttaactcacgctaatgtta 40266579  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 572 - 626
Target Start/End: Original strand, 11135747 - 11135802
Alignment:
Q  572 tgctctttatccaaat-attttgctcatttccaaaataaatgatcaaaatacccct 626  Q
    ||||||||| |||||| |||| ||||||||||||||||||||| ||||||||||||    
T  11135747 tgctctttacccaaatgatttcgctcatttccaaaataaatgaccaaaatacccct 11135802  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 566 - 638
Target Start/End: Original strand, 39222979 - 39223052
Alignment:
Q  566 gaatcctgctctttatcca-aatattttgctcatttccaaaataaatgatcaaaatacccctgcgtgaattaac 638  Q
    |||| |||||||||| ||| |||||||||||||||||||||||||| | ||||||| ||| | ||||| |||||    
T  39222979 gaattctgctctttacccagaatattttgctcatttccaaaataaaagttcaaaatgcccttacgtgatttaac 39223052  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 572 - 626
Target Start/End: Original strand, 3539674 - 3539729
Alignment:
Q  572 tgctctttatccaaata-ttttgctcatttccaaaataaatgatcaaaatacccct 626  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||    
T  3539674 tgctctttatccaaatggttttgctcatttccaaaataaatgatcaaaatagccct 3539729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 566 - 626
Target Start/End: Complemental strand, 26998365 - 26998304
Alignment:
Q  566 gaatcctgctctttatccaaatatttt-gctcatttccaaaataaatgatcaaaatacccct 626  Q
    |||| |||||||| ||||||||  ||| ||||||||| ||||||||||||||||||| ||||    
T  26998365 gaattctgctcttcatccaaatggtttcgctcatttctaaaataaatgatcaaaatatccct 26998304  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 566 - 652
Target Start/End: Original strand, 12965049 - 12965136
Alignment:
Q  566 gaatcctgctctttatccaaatattt-tgctcatttccaaaataaatgatcaaaatacccctgcgtgaattaactcacgctaatgtta 652  Q
    |||| |||||||||| |||||  ||| ||||||||| |||| |||||||||||||| | ||| ||||| |||||||||||||||||||    
T  12965049 gaattctgctctttacccaaacgtttctgctcattttcaaagtaaatgatcaaaatgctcctacgtgagttaactcacgctaatgtta 12965136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 592 - 644
Target Start/End: Complemental strand, 19984754 - 19984702
Alignment:
Q  592 tgctcatttccaaaataaatgatcaaaatacccctgcgtgaattaactcacgc 644  Q
    ||||| |||| ||| ||||||| |||||||||||||||||| |||||||||||    
T  19984754 tgctcgtttctaaagtaaatgaccaaaatacccctgcgtgagttaactcacgc 19984702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 565 - 638
Target Start/End: Original strand, 22727661 - 22727735
Alignment:
Q  565 tgaatcctgctctttatccaaata-ttttgctcatttccaaaataaatgatcaaaatacccctgcgtgaattaac 638  Q
    |||||||||||||||| |||||||  |||||| ||| ||||| ||||||| | |||||||||| ||||| |||||    
T  22727661 tgaatcctgctctttacccaaatagatttgcttattcccaaagtaaatgacccaaatacccctacgtgagttaac 22727735  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 588 - 641
Target Start/End: Complemental strand, 38226272 - 38226219
Alignment:
Q  588 attttgctcatttccaaaataaatgatcaaaatacccctgcgtgaattaactca 641  Q
    ||||||| |||||||||  ||||||| |||||||||||||||||| || |||||    
T  38226272 attttgcccatttccaatgtaaatgaccaaaatacccctgcgtgagtttactca 38226219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 572 - 626
Target Start/End: Original strand, 54208186 - 54208241
Alignment:
Q  572 tgctctttatccaaata-ttttgctcatttccaaaataaatgatcaaaatacccct 626  Q
    ||||||||||||||||  ||||||||||| ||||| ||||||||||||||||||||    
T  54208186 tgctctttatccaaatggttttgctcattcccaaagtaaatgatcaaaatacccct 54208241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 565 - 622
Target Start/End: Complemental strand, 1826638 - 1826580
Alignment:
Q  565 tgaatcctgctctttatccaaat-attttgctcatttccaaaataaatgatcaaaatac 622  Q
    ||||| ||||||||||||||||| |||||||||||||  ||| ||||||||||||||||    
T  1826638 tgaattctgctctttatccaaatgattttgctcatttttaaagtaaatgatcaaaatac 1826580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 562 - 626
Target Start/End: Complemental strand, 7204033 - 7203968
Alignment:
Q  562 tgatgaatcctgctctttatccaaat-attttgctcatttccaaaataaatgatcaaaatacccct 626  Q
    |||||||| ||||| ||| ||||||| ||||||||| || ||||| ||||||||||||||||||||    
T  7204033 tgatgaattctgctatttttccaaatgattttgctcgttcccaaagtaaatgatcaaaatacccct 7203968  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 566 - 626
Target Start/End: Original strand, 14153354 - 14153415
Alignment:
Q  566 gaatcctgctctttatccaaat-attttgctcatttccaaaataaatgatcaaaatacccct 626  Q
    |||| |||||| ||| |||||| |||||||||||| ||||| ||||||| ||||||||||||    
T  14153354 gaattctgctcattacccaaatgattttgctcattcccaaagtaaatgaccaaaatacccct 14153415  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 590 - 652
Target Start/End: Complemental strand, 5603214 - 5603152
Alignment:
Q  590 tttgctcatttccaaaataaatgatcaaaatacccctgcgtgaattaactcacgctaatgtta 652  Q
    ||||||||||| |||| |||||||||||| |  |||||| ||| ||||||||||||| |||||    
T  5603214 tttgctcattttcaaagtaaatgatcaaagtgtccctgcatgagttaactcacgctagtgtta 5603152  T

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