View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11714_low_20 (Length: 382)
Name: NF11714_low_20
Description: NF11714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11714_low_20 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 136; Significance: 7e-71; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 194 - 361
Target Start/End: Original strand, 34848016 - 34848183
Alignment:
| Q |
194 |
aagattaaccattgatgatagagcctctattggttatctttcagatggtctcatagttcgtacacaagaaaggaaaaaaggtacatatattctaatatat |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
34848016 |
aagattaaccattgatgatagagcctctattggttatctttcagatggtctcatagttcgtacacaagaaaggaaaaaaggtacatatattgtaatacat |
34848115 |
T |
|
| Q |
294 |
ttgtgaatttttaatttagattcaaattttatcaagacatcaggtgcaagatacacatgggatacagt |
361 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| | |||| ||||||||| |||||||| |
|
|
| T |
34848116 |
ttgtaaatttttaatttagattcaaattttatcaagacatcggatgcaggatacacataagatacagt |
34848183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 34847839 - 34847967
Alignment:
| Q |
17 |
cataggtcataattcaaggacatgtaattcattaagaggaagtagtagttttgttggagttagactttttggtgttcaacttgatttatcttcttcttgt |
116 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34847839 |
cataggtcataattcaaggacttgtaattcattaagaggaagtggtagttttgttggagttagactttttggtgttcaacttgatttatcttcttcttgt |
34847938 |
T |
|
| Q |
117 |
gtgtccatgaaaaagagttttagcatgga |
145 |
Q |
| |
|
|| |||||||||||||||||||||||||| |
|
|
| T |
34847939 |
gtttccatgaaaaagagttttagcatgga |
34847967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University