View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11714_low_21 (Length: 378)
Name: NF11714_low_21
Description: NF11714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11714_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 41923311 - 41923516
Alignment:
| Q |
1 |
attggcactttcgttatttgttgaacttggtcttctagtatgcaaccggtatttctgtgcaaaacaaatnnnnnnntttagattttaattgaggataagg |
100 |
Q |
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| T |
41923311 |
attggcactttcgttatttgttgaacttggtcttctagtatgcaaccggtatttctgtgcaaaacaaataaaaaaatttagattttaattgaggataagg |
41923410 |
T |
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| Q |
101 |
aactgttaatgtacaaaaattatcacttatttgttttgaaatcctgtaaaattgaaagggactaaaacaagatgaaacagttaaaactaaatgattcaat |
200 |
Q |
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| T |
41923411 |
aagtgttaatgtacaaaaattatcactcatttgttttgaaatcctgtaaaattgaaagggactaaaacaagatgaaacagttaaaactaaatgattcaat |
41923510 |
T |
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| Q |
201 |
atcaaa |
206 |
Q |
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|||||| |
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| T |
41923511 |
atcaaa |
41923516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 308 - 368
Target Start/End: Original strand, 41923600 - 41923660
Alignment:
| Q |
308 |
aacctgcaaatggcttttaacttcatcatttgtgaggccatcaacattcattacctctctg |
368 |
Q |
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| T |
41923600 |
aacctgtaaatggcttttgacttcatcatttgtgaggccatcaacattcattacctctctg |
41923660 |
T |
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