View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11714_low_24 (Length: 357)
Name: NF11714_low_24
Description: NF11714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11714_low_24 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 30038480 - 30038194
Alignment:
| Q |
18 |
gatttttctctcgcgatgtaaagcattttccttgccatttttctatttcttttcctccaaattttatggtattgttataattttgtttattaaaacaagc |
117 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
30038480 |
gatttttctctcgcgatgtaaaccattttccttgccatttttctatttcttttcctccaaattttatggtatttttataattttgtttaataaaacaaga |
30038381 |
T |
|
| Q |
118 |
gagcctaccaagtttgatatattccttgttcactagatcctcaactaggagccattggaagtatagttccagacaaaaacacaagtttttctgtcttgtg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| | ||||||||||||||| |
|
|
| T |
30038380 |
gagcctaccaagtttgatatattccttgttcactagatcctcaactaggagcc--tggaagtatagttccggacaaaaacactaatttttctgtcttgtg |
30038283 |
T |
|
| Q |
218 |
tggtttt-ttagaaacctaagatgaaaaaag---ctttcctaacttgtaagacttagttagatgttgtcccgttccctttgccttgtag |
302 |
Q |
| |
|
||||||| |||||||||||||||| |||||| || | |||||||||||||||||||||| ||||||| ||||||||||| |||||| |
|
|
| T |
30038282 |
tggttttgttagaaacctaagatggaaaaagaagctcacataacttgtaagacttagttagacgttgtccggttccctttgcgttgtag |
30038194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University