View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11714_low_26 (Length: 350)

Name: NF11714_low_26
Description: NF11714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11714_low_26
NF11714_low_26
[»] scaffold0288 (2 HSPs)
scaffold0288 (154-341)||(3763-3950)
scaffold0288 (24-156)||(4091-4221)
[»] chr8 (3 HSPs)
chr8 (256-341)||(1674229-1674314)
chr8 (256-341)||(20863887-20863972)
chr8 (256-318)||(16686334-16686396)
[»] chr6 (29 HSPs)
chr6 (256-341)||(4617025-4617110)
chr6 (204-341)||(4625902-4626039)
chr6 (255-337)||(4299788-4299870)
chr6 (256-341)||(4601792-4601877)
chr6 (256-341)||(4480696-4480781)
chr6 (255-337)||(4267214-4267296)
chr6 (259-341)||(4570978-4571060)
chr6 (259-341)||(4504441-4504523)
chr6 (256-337)||(4557128-4557209)
chr6 (256-339)||(4505860-4505943)
chr6 (255-341)||(3171743-3171829)
chr6 (255-341)||(4256656-4256742)
chr6 (259-341)||(4585642-4585724)
chr6 (259-341)||(4592237-4592319)
chr6 (256-341)||(4516324-4516409)
chr6 (256-339)||(4492958-4493041)
chr6 (259-341)||(4490399-4490481)
chr6 (256-330)||(4563714-4563788)
chr6 (256-318)||(4606958-4607020)
chr6 (256-341)||(4560509-4560594)
chr6 (256-341)||(4613762-4613847)
chr6 (257-341)||(4392070-4392154)
chr6 (255-338)||(4622144-4622227)
chr6 (272-341)||(4568072-4568141)
chr6 (256-339)||(4515167-4515250)
chr6 (255-337)||(4260202-4260284)
chr6 (256-341)||(4461126-4461211)
chr6 (256-341)||(4574311-4574396)
chr6 (256-341)||(4579435-4579520)
[»] chr5 (2 HSPs)
chr5 (256-341)||(28000143-28000228)
chr5 (255-341)||(24103001-24103087)
[»] scaffold0477 (1 HSPs)
scaffold0477 (254-341)||(4730-4817)
[»] chr7 (1 HSPs)
chr7 (250-341)||(3086417-3086508)
[»] chr3 (1 HSPs)
chr3 (256-330)||(1281117-1281191)


Alignment Details
Target: scaffold0288 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 154 - 341
Target Start/End: Complemental strand, 3950 - 3763
Alignment:
Q  154 ttatattggtcaactcaaataactaaatgtatcatatttgattgactgtcaaacaaaatcaagaggatatcgatgaatacacaaccacattttaagttaa 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3950 ttatattggtcaactcaaataactaaatgtatcatatttgattgactgtcaaacaaaatcaagaggatatcgatgaatacacaaccacattttaagttaa 3851  T
Q  254 cattgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttct 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3850 cattgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttct 3763  T

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Target: scaffold0288; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 24 - 156
Target Start/End: Complemental strand, 4221 - 4091
Alignment:
Q  24 gcggtccaaattgcgttcgcaaataatgtgtatgtttctgcacttctgttgagtgtgtatagtagcttgtgaaattgatcaatatttgcttgtaatgtaa 123  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  4221 gcggtctaaattgcgttcgcatataatgtgtatgtttctgcacttctgttgagtgtgtatagtagcttgtgaaattgatcaatatttgcttgta--gtaa 4124  T
Q  124 gatgcttatgaaccgatattggtccttgtgtta 156  Q
    |||||||||||||||||||||||||||||||||    
T  4123 gatgcttatgaaccgatattggtccttgtgtta 4091  T

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Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 256 - 341
Target Start/End: Original strand, 1674229 - 1674314
Alignment:
Q  256 ttgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttct 341  Q
    |||||||||||| || |||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1674229 ttgtttaagcaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttct 1674314  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 256 - 341
Target Start/End: Complemental strand, 20863972 - 20863887
Alignment:
Q  256 ttgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttct 341  Q
    |||||||||||| ||||||||||| |||||||||| |||||| ||||||| |||  | ||||| |||| |||||||||||||||||    
T  20863972 ttgtttaagcaacacctccttaatcactttgtccaagttcatatatgaaccaccttccggtcttgtgtcctcctctgccttcttct 20863887  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 256 - 318
Target Start/End: Complemental strand, 16686396 - 16686334
Alignment:
Q  256 ttgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtct 318  Q
    ||||||||||||||||||| |||| ||||| |||| |||||||||||||| |||||| |||||    
T  16686396 ttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtct 16686334  T

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Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 256 - 341
Target Start/End: Original strand, 4617025 - 4617110
Alignment:
Q  256 ttgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttct 341  Q
    |||||||||||| || |||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4617025 ttgtttaagcaacacatccttaataactttgttcaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttct 4617110  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 204 - 341
Target Start/End: Original strand, 4625902 - 4626039
Alignment:
Q  204 aaacaaaatcaagaggatatcgatgaatacacaaccacattttaagttaacattgtttaagcaaaacctccttaataactttgtccaggttcatgtatga 303  Q
    |||| |||||||||||  || ||||||||||||||||||||||||  ||| ||||||||||||| || || ||||| | ||| ||||  |||||||||||    
T  4625902 aaaccaaatcaagaggggattgatgaatacacaaccacattttaatctaatattgtttaagcaagacatcattaatcagtttatccatattcatgtatga 4626001  T
Q  304 acgaccacctggtctagtgttctcctctgccttcttct 341  Q
    || |||||| || ||| |||||||||||||||||||||    
T  4626002 acaaccaccgggactaatgttctcctctgccttcttct 4626039  T

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Target: chr6; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 255 - 337
Target Start/End: Complemental strand, 4299870 - 4299788
Alignment:
Q  255 attgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttc 337  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||| |||| |||||||||  ||||||||||||||||||||    
T  4299870 attgtttaagcagaacctccttaataactttgtccaagttcatgtacgaacaaccacctggattagtgttctcctctgccttc 4299788  T

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Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 256 - 341
Target Start/End: Original strand, 4601792 - 4601877
Alignment:
Q  256 ttgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttct 341  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||| |||||||| |||||| |||| ||||||    
T  4601792 ttgtttaagcaacacctccttaataactttgtccaggttcttgtatgaacaaccacctagtctagtgctctcctttgccatcttct 4601877  T

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Target: chr6; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 256 - 341
Target Start/End: Original strand, 4480696 - 4480781
Alignment:
Q  256 ttgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttct 341  Q
    |||||||||||| ||||||||||| |||||||||| |||||||||||||| |||||| ||||| |||| |||||||||| ||||||    
T  4480696 ttgtttaagcaagacctccttaatcactttgtccaagttcatgtatgaacaaccaccaggtcttgtgtcctcctctgccatcttct 4480781  T

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Target: chr6; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 255 - 337
Target Start/End: Complemental strand, 4267296 - 4267214
Alignment:
Q  255 attgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttc 337  Q
    ||||||||||||  |||||||||||||||||||||| |||||||||||||  |||||| ||||| |||||||| |||||||||    
T  4267296 attgtttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccaggtcttgtgttctcttctgccttc 4267214  T

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Target: chr6; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 259 - 341
Target Start/End: Original strand, 4570978 - 4571060
Alignment:
Q  259 tttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttct 341  Q
    ||||||||||||||||||||| ||||| |||| |||||||||||||| |||||| ||||| |||| |||||| ||||||||||    
T  4570978 tttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcttct 4571060  T

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Target: chr6; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 259 - 341
Target Start/End: Complemental strand, 4504523 - 4504441
Alignment:
Q  259 tttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttct 341  Q
    ||||||||| || |||||||| |||||||||| |||||||||||||| ||||||  |||| |||| |||||||||||||||||    
T  4504523 tttaagcaagacgtccttaatcactttgtccaagttcatgtatgaacaaccaccaagtcttgtgtcctcctctgccttcttct 4504441  T

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Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 256 - 337
Target Start/End: Original strand, 4557128 - 4557209
Alignment:
Q  256 ttgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttc 337  Q
    |||||||||||||||||||||||| ||||| ||||  ||||||||||||| |||||| ||||| |||| |||||| ||||||    
T  4557128 ttgtttaagcaaaacctccttaatcactttttccaaattcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttc 4557209  T

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Target: chr6; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 4505860 - 4505943
Alignment:
Q  256 ttgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttctt 339  Q
    |||||||||||| |||||||||||||||||||||| ||||||| |||||| |||||| ||||| || | ||||| |||| ||||    
T  4505860 ttgtttaagcaacacctccttaataactttgtccaagttcatgaatgaacaaccaccaggtcttgtatcctcctttgccctctt 4505943  T

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Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 255 - 341
Target Start/End: Original strand, 3171743 - 3171829
Alignment:
Q  255 attgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttct 341  Q
    ||||||||||||| ||||||||||| ||||| |||| |||||||||||||| ||||||   ||| || | |||||||||||||||||    
T  3171743 attgtttaagcaagacctccttaatcactttatccaagttcatgtatgaacaaccaccaaatcttgtatcctcctctgccttcttct 3171829  T

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Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 255 - 341
Target Start/End: Complemental strand, 4256742 - 4256656
Alignment:
Q  255 attgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttct 341  Q
    ||||||||||||  |||||||||||||||||||||| ||||||  ||||| ||||| |||| || ||||||| ||||| ||||||||    
T  4256742 attgtttaagcatgacctccttaataactttgtccaagttcatcaatgaatgaccagctgggctggtgttcttctctgtcttcttct 4256656  T

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Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 341
Target Start/End: Original strand, 4585642 - 4585724
Alignment:
Q  259 tttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttct 341  Q
    ||||||||||||||||||||| ||||| |||| ||| |||||||||| ||| || ||||| |||| |||||| ||||||||||    
T  4585642 tttaagcaaaacctccttaatcactttttccaagtttatgtatgaacaacctccaggtctcgtgtcctcctccgccttcttct 4585724  T

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Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 341
Target Start/End: Original strand, 4592237 - 4592319
Alignment:
Q  259 tttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttct 341  Q
    ||||||||| |||||||| || | |||||||| |||||| ||||||| ||| || ||||| ||||||||||||||||||||||    
T  4592237 tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgttctcctctgccttcttct 4592319  T

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Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 256 - 341
Target Start/End: Original strand, 4516324 - 4516409
Alignment:
Q  256 ttgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttct 341  Q
    |||||| ||||  ||||||||||| ||||| |||| |||||  ||||||| |||||||||||| |||| |||||||||||||||||    
T  4516324 ttgtttgagcagcacctccttaatcactttttccaagttcacatatgaacaaccacctggtcttgtgtcctcctctgccttcttct 4516409  T

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Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 4492958 - 4493041
Alignment:
Q  256 ttgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttctt 339  Q
    |||||||||||| || ||||| || |||||||||| |||||||||||||| |||||| |||   |||| |||||||||||||||    
T  4492958 ttgtttaagcaagacatccttgatcactttgtccaagttcatgtatgaacaaccaccaggtactgtgtcctcctctgccttctt 4493041  T

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Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 341
Target Start/End: Complemental strand, 4490481 - 4490399
Alignment:
Q  259 tttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttct 341  Q
    ||||||||  || |||||||| |||||||||| |||||||||||||| ||||||  |||| |||| |||| ||||||||||||    
T  4490481 tttaagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgtcctccgctgccttcttct 4490399  T

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Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 256 - 330
Target Start/End: Original strand, 4563714 - 4563788
Alignment:
Q  256 ttgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctc 330  Q
    ||||||||||||||||||||| || |||||||||| |||||||||||||| ||| || | ||| ||||| |||||    
T  4563714 ttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttttcctc 4563788  T

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Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 256 - 318
Target Start/End: Complemental strand, 4607020 - 4606958
Alignment:
Q  256 ttgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtct 318  Q
    ||||||||||||||||| |||||| ||||| |||| |||||||||||||  ||||||||||||    
T  4607020 ttgtttaagcaaaaccttcttaatcactttttccaagttcatgtatgaaaaaccacctggtct 4606958  T

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Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 341
Target Start/End: Original strand, 4560509 - 4560594
Alignment:
Q  256 ttgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttct 341  Q
    |||||||||||| ||||||||||| ||||| |||| |||||||||||||| ||| || ||||| |||| | |||| ||||| ||||    
T  4560509 ttgtttaagcaacacctccttaatcactttctccaagttcatgtatgaacaacctccaggtctcgtgtacacctccgcctttttct 4560594  T

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Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 341
Target Start/End: Complemental strand, 4613847 - 4613762
Alignment:
Q  256 ttgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttct 341  Q
    |||||| ||||  ||||| || || |||||||||| |||||| ||||||| ||| |||||||| |||| |||||||||||||||||    
T  4613847 ttgtttcagcagcacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctctgccttcttct 4613762  T

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Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 257 - 341
Target Start/End: Complemental strand, 4392154 - 4392070
Alignment:
Q  257 tgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttct 341  Q
    ||||||||||| ||||||||||| | |||||||| ||||||| |||||  |||||| ||||  |||| ||||| |||||||||||    
T  4392154 tgtttaagcaagacctccttaatcagtttgtccaagttcatgaatgaagaaccaccaggtcatgtgtcctcctttgccttcttct 4392070  T

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Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 338
Target Start/End: Original strand, 4622144 - 4622227
Alignment:
Q  255 attgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttct 338  Q
    ||||||||||||  |||||||||||||||||||||| |||  ||||||||| |||||| || || ||  |||| ||||||||||    
T  4622144 attgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttct 4622227  T

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Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 341
Target Start/End: Original strand, 4568072 - 4568141
Alignment:
Q  272 tccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttct 341  Q
    |||||||| |||||||||| |||||||||||||  | |||| ||||| |||| || ||||||||||||||    
T  4568072 tccttaatcactttgtccaagttcatgtatgaagaatcaccaggtcttgtgtccttctctgccttcttct 4568141  T

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Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 4515250 - 4515167
Alignment:
Q  256 ttgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttctt 339  Q
    |||||||||||| |||||||| || |||||||||| ||||| |||||||   || ||  ||||||||| ||| |||||||||||    
T  4515250 ttgtttaagcaacacctccttgatcactttgtccaagttcaagtatgaagacccgccaagtctagtgtcctcgtctgccttctt 4515167  T

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Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 337
Target Start/End: Complemental strand, 4260284 - 4260202
Alignment:
Q  255 attgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttc 337  Q
    ||||||| ||||  |||| ||||||||||||||||| ||||||  |||||  ||||  ||| || ||||||||||||||||||    
T  4260284 attgtttgagcatgacctgcttaataactttgtccaagttcatcaatgaataaccagatggactggtgttctcctctgccttc 4260202  T

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Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 341
Target Start/End: Original strand, 4461126 - 4461211
Alignment:
Q  256 ttgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttct 341  Q
    |||||||||||| || |||||||| |||||||||| |||| ||||||||  ||| || ||||| || | ||||||  |||||||||    
T  4461126 ttgtttaagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttct 4461211  T

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Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 341
Target Start/End: Original strand, 4574311 - 4574396
Alignment:
Q  256 ttgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttct 341  Q
    |||||||||||| ||||||||||| ||||| |||| |||  ||||||||| ||| || ||||| |||| | ||||  |||||||||    
T  4574311 ttgtttaagcaacacctccttaatcactttctccaagtttgtgtatgaacaacctccaggtctcgtgtccacctccaccttcttct 4574396  T

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Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 341
Target Start/End: Original strand, 4579435 - 4579520
Alignment:
Q  256 ttgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttct 341  Q
    |||||| || || ||||||||||| ||||| |||| ||||||||||||||  || || ||||| |||| ||||||  |||||||||    
T  4579435 ttgtttgagtaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttct 4579520  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 256 - 341
Target Start/End: Complemental strand, 28000228 - 28000143
Alignment:
Q  256 ttgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttct 341  Q
    |||||||| ||| || |||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  28000228 ttgtttaaacaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgcctttttct 28000143  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 255 - 341
Target Start/End: Original strand, 24103001 - 24103087
Alignment:
Q  255 attgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttct 341  Q
    ||||||||||||  |||||||||||||||||||||| |||||||||||||  |||||| | ||| |||||||| |||||||||||||    
T  24103001 attgtttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccagatcttgtgttctcttctgccttcttct 24103087  T

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Target: scaffold0477 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 254 - 341
Target Start/End: Complemental strand, 4817 - 4730
Alignment:
Q  254 cattgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttct 341  Q
    |||||||||||||  ||||||||||| |||||||||| ||||||||||||||  ||||| |  || ||||||||||||||||||||||    
T  4817 cattgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccaccagaactggtgttctcctctgccttcttct 4730  T

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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 250 - 341
Target Start/End: Original strand, 3086417 - 3086508
Alignment:
Q  250 ttaacattgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttct 341  Q
    |||| ||| ||||||||| |||||||||||||||||||||| |||||||||||||| ||||||    || |||||||| ||||| |||||||    
T  3086417 ttaatattttttaagcaagacctccttaataactttgtccaagttcatgtatgaacaaccaccgatactggtgttctcttctgctttcttct 3086508  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 256 - 330
Target Start/End: Original strand, 1281117 - 1281191
Alignment:
Q  256 ttgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctc 330  Q
    |||||||||||| |  |||||||| |||||||| | |||||||||||||| |||||| |||||||||||||||||    
T  1281117 ttgtttaagcaacatttccttaatcactttgtcgaagttcatgtatgaacaaccacccggtctagtgttctcctc 1281191  T

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