View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11714_low_27 (Length: 350)
Name: NF11714_low_27
Description: NF11714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11714_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 13 - 336
Target Start/End: Complemental strand, 45512036 - 45511713
Alignment:
| Q |
13 |
tagggggaggtggagagatttcaaaagtttggataaaaggatcaaaaaagaataaatgggaaccaatgtcaatgaattggggtgctaattggcaaagcct |
112 |
Q |
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| T |
45512036 |
tagggggaggtggagagatttcaaaagtttggataaaaggatcaaaaaagaataaatgggaaccaatgtcaatgaattggggtgctaattggcaaagcct |
45511937 |
T |
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| Q |
113 |
aagctatctcaatggtcaaagcttatcatttagaattcaactcaaaaatgggaagactcgtacagctattaatgttgcaccttccaactggagatttggc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45511936 |
aagctatctcaatggtcaaagcttatcatttagaattcaactcaaaaatgggaagactcgtacagctattaatgttgcaccttccaactggagatttggc |
45511837 |
T |
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| Q |
213 |
cagtcttacaaaagtaacgttcagttctgattctgagcacatatgagttatgatatgaatcacttctattattgtgcattcttctatttcagttctttat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45511836 |
cagtcttacaaaagtaacgttcagttctgattctgagcacatatgagttatgatatgaatcacttctattattgtgcattcttctatttcagttctttat |
45511737 |
T |
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| Q |
313 |
tatgtaacagctatatgctacttg |
336 |
Q |
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| T |
45511736 |
tatgtaacagctatatggtacttg |
45511713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 45506576 - 45506347
Alignment:
| Q |
13 |
tagggggaggtggagagatttcaaaagtttggataaaaggatcaaaaaagaataaatgggaaccaatgtcaatgaattggggtgctaattggcaaagcct |
112 |
Q |
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| T |
45506576 |
tagggggaggtggagagatttcaaaagtttggataaaaggatcaaaaaagaataaatgggaaccaatgtcaatgaattggggtgctaattggcaaagcct |
45506477 |
T |
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| Q |
113 |
aagctatctcaatggtcaaagcttatcatttagaattcaactcaaaaatgggaagactcgtacagctattaatgttgcaccttccaactggagatttggc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45506476 |
aagctatctcaatggtcaaagcttatcatttagaattcaactcaaaaatgggaagactcgtacagctattaatgttgcaccttccaactggagatttggc |
45506377 |
T |
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| Q |
213 |
cagtcttacaaaagtaacgttcagttctga |
242 |
Q |
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| T |
45506376 |
cagtcttacaaaagtaacgttcagttctga |
45506347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 36 - 244
Target Start/End: Original strand, 38118164 - 38118372
Alignment:
| Q |
36 |
aaagtttggataaaaggatcaaaaaagaataaatgggaaccaatgtcaatgaattggggtgctaattggcaaagcctaagctatctcaatggtcaaagct |
135 |
Q |
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||||||||||| ||||| || |||| ||| || |||||| | ||||||| ||||||||||| ||| ||||||||| | |||||||| |||||||| ||| |
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| T |
38118164 |
aaagtttggatcaaagggtctaaaatgaaaaactgggaaaccatgtcaaggaattggggtgttaactggcaaagcttgagctatctaaatggtcagagcc |
38118263 |
T |
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| Q |
136 |
tatcatttagaattcaactcaaaaatgggaagactcgtacagctattaatgttgcaccttccaactggagatttggccagtcttacaaaagtaacgttca |
235 |
Q |
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| || || ||| | ||||||| ||||| ||||||||||||||||||||||| | ||| || | ||||||||||| ||||||| || || || ||||| |
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| T |
38118264 |
tgtccttcagagtccaactcagtaatggaaagactcgtacagctattaatgtggtaccctctagttggagatttggtcagtctttcatcagcaaggttca |
38118363 |
T |
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| Q |
236 |
gttctgatt |
244 |
Q |
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|||| |||| |
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| T |
38118364 |
gttccgatt |
38118372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 244
Target Start/End: Original strand, 38165800 - 38166008
Alignment:
| Q |
36 |
aaagtttggataaaaggatcaaaaaagaataaatgggaaccaatgtcaatgaattggggtgctaattggcaaagcctaagctatctcaatggtcaaagct |
135 |
Q |
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||||||||||| ||||| || |||| || || |||||| | ||||||| |||||||||||||| ||||||||| |||||||||| |||||||| || |
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| T |
38165800 |
aaagtttggatcaaagggtctaaaatgagaaactgggaatctatgtcaagaaattggggtgctaactggcaaagcttaagctatctaaatggtcagagtc |
38165899 |
T |
|
| Q |
136 |
tatcatttagaattcaactcaaaaatgggaagactcgtacagctattaatgttgcaccttccaactggagatttggccagtcttacaaaagtaacgttca |
235 |
Q |
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| || || ||| | ||||||| ||||| ||||||| || ||| ||||||| | ||| || | ||||||||||| ||||||| || || || ||||| |
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| T |
38165900 |
tgtccttcagagtccaactcagtaatggaaagactctcacggctgttaatgtggtaccctctagttggagatttggtcagtctttcatcagcaaggttca |
38165999 |
T |
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| Q |
236 |
gttctgatt |
244 |
Q |
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||||||||| |
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| T |
38166000 |
gttctgatt |
38166008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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