View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11714_low_28 (Length: 346)
Name: NF11714_low_28
Description: NF11714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11714_low_28 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 333
Target Start/End: Complemental strand, 32930309 - 32929995
Alignment:
| Q |
19 |
actaaatgcatcatcattaaaaaaggaaatcttctactgatagaaaaaaggtttagttttgtagtaatatgcaatttgatatttgaataatcaagaataa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32930309 |
actaaatgcatcatcattaaaaaaggaaatcttctactgatagaaaaaaggtttagttttgtagtaatatgcaatttgatatttgaataatcaagaataa |
32930210 |
T |
|
| Q |
119 |
aatgaacttctaaatagtacataggaatgcattatgcatgacaaacaagctagcctatagttcagtaataaaattagcaggaccatttaggtgtgatttt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32930209 |
aatgaacttctaaatagtacataggaatgcattatgcatgacaaacaagctagcctatagttcagtaataaaattagcaggaccatttaggtgtgatttt |
32930110 |
T |
|
| Q |
219 |
gacaactcataacttctggaaagtcacaatcacacgttatataaccgtaacaaaattaataaataacttgctttgtacaattgtaagtgcttcataacgt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32930109 |
gacaactcataacttctggaaagtcacaatcacacgttatataaccgtaacaaaattaataaataacttgctttgtacaattgtaagtgcttcataacgt |
32930010 |
T |
|
| Q |
319 |
gaaagtgaatattct |
333 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
32930009 |
gaaagtgaatattct |
32929995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University