View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11714_low_29 (Length: 320)

Name: NF11714_low_29
Description: NF11714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11714_low_29
NF11714_low_29
[»] chr7 (1 HSPs)
chr7 (13-307)||(38881317-38881610)


Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 307
Target Start/End: Original strand, 38881317 - 38881610
Alignment:
Q  13 tcatcaattataattttatcctaatcaaaaaattaatctttgttattccgtgcaaagatactcagttnnnnnnncatgtaggttgaataatatctatgtt 112  Q
    ||||| |||| |||||||||| ||||||||||||||||||| | |||| ||||||||||||||||||       | ||||||||||||||||||| ||||    
T  38881317 tcatctattacaattttatccgaatcaaaaaattaatctttatcattcggtgcaaagatactcagttaaaaaaacgtgtaggttgaataatatctttgtt 38881416  T
Q  113 tacgtgtgtgaatggaatataaaaatttcaaactcaaatgaatattaactttgaatgaaaaagtagtataccgtatgacttactaatacaaaatttcaaa 212  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38881417 tacgtgtgtgaatggaatataaaa-tttcaaactcaaatgaatattaactttgaatgaaaaagtagtataccgtatgacttactaatacaaaatttcaaa 38881515  T
Q  213 ctcaactgaatattaagtttgaatnnnnnnngtataatataccgtatgagttaataacatacatacacttgttaatggtccaatggatggtcatc 307  Q
    ||||||||||||||||||||||||       ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38881516 ctcaactgaatattaagtttgaataaaaaaagtatagtataccgtatgagttaataacatacatacacttgttaatggtccaatggatggtcatc 38881610  T

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