View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11714_low_3 (Length: 728)
Name: NF11714_low_3
Description: NF11714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11714_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 622; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 5 - 716
Target Start/End: Original strand, 32582299 - 32583005
Alignment:
| Q |
5 |
gagaagcaaagggggcaattacgaatgtgggtcccacacattgtacacaaacacaaatgcctacatggcagtaacagcactactgactccctttctccac |
104 |
Q |
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| T |
32582299 |
gagaaacaaagagggcaattacgaatgtgggtcccacacattgtacacaaacacaaatgcctacatggcagtaacagcactactgactccctttccccac |
32582398 |
T |
|
| Q |
105 |
aaccgctgcacaacttcccaaccaccggcgatgacgcttcttccaccaccacctcctccttgacatggtggttacttccacaactcgacgctgcatcttc |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
32582399 |
aaccgctgcacaacttcccaaccaccggcgatgacgcttcttccaccaccacctcctccttgacatggtggttacttccacaactcgacgctgcatcgtc |
32582498 |
T |
|
| Q |
205 |
atcgttacggtgattctcaacatgcgccagaacttgttctaattcgttacgtaacgtgtttacagcagattcgttagtcaaagccatttctctccaaatc |
304 |
Q |
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| T |
32582499 |
atcgttacggtgattctcaacatgcgccagaacttgttctaattcgttacgtaacgtgtttacagcagattcgtttgtcaaagccatttctctccaaatc |
32582598 |
T |
|
| Q |
305 |
tgattctccataatcagtgttttcgctttttcttgaagcattagattttgtttctccattctctgaatctcttcttctttttgcttcagtttctttgtta |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32582599 |
tgattctccataatcagtgttttcgctttttcttgaagcattagattttgtttctccattctctgaatctcttcttctttttgcttcagtttctttgtta |
32582698 |
T |
|
| Q |
405 |
ctgcttcttggattgccgcttgtagcattcttgattgcttcaatctttgctcttctatctccattctcactctctctgtctgttgattaacaaatggagt |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
32582699 |
ctgcttcttggattgccgcttgtagcattcttgattgcttcaatctttgctcttctatctccattctcactctctctgtctgttaattaacaaatgaagt |
32582798 |
T |
|
| Q |
505 |
attaattagtaataattaaccataatcacataatctaagcaataaatctgttacttccttttaacagtttctttttccttgaacaaaatttnnnnnnnnn |
604 |
Q |
| |
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||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32582799 |
attcattagtaataattaaccataatcacaaaatctaagcaataaatctgtaacttccttttaacagtttctttttccttgaacaaaat----aaaaaaa |
32582894 |
T |
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| Q |
605 |
gtgaaagatgaattaatttgcttacatgttgagcaatgaagagatcgatttcagattgttgattttggagatgataaaggagattctgatcaacaaagga |
704 |
Q |
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| T |
32582895 |
gtgaaagatgaattaa-ttgcttacatgttgagcaatgaagagatcgatttcagattgttgattttggagatgataaaggagattctgatcaacaaagga |
32582993 |
T |
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| Q |
705 |
aggttgtgatga |
716 |
Q |
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|||||| ||||| |
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| T |
32582994 |
aggttgagatga |
32583005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 658 - 716
Target Start/End: Complemental strand, 38146675 - 38146617
Alignment:
| Q |
658 |
gattgttgattttggagatgataaaggagattctgatcaacaaaggaaggttgtgatga |
716 |
Q |
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|||||||||||||||| ||| |||||||||| |||||||||||||||||| ||||| |
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| T |
38146675 |
gattgttgattttggaataaatagaggagattcttatcaacaaaggaaggttgagatga |
38146617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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