View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11714_low_30 (Length: 319)

Name: NF11714_low_30
Description: NF11714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11714_low_30
NF11714_low_30
[»] chr3 (2 HSPs)
chr3 (11-319)||(22203092-22203400)
chr3 (259-296)||(35959611-35959648)
[»] chr1 (6 HSPs)
chr1 (102-164)||(17468310-17468372)
chr1 (107-164)||(38733353-38733410)
chr1 (102-167)||(52676326-52676391)
chr1 (107-166)||(38668331-38668390)
chr1 (107-164)||(369606-369663)
chr1 (111-164)||(52961557-52961610)
[»] chr6 (3 HSPs)
chr6 (107-164)||(33494510-33494567)
chr6 (107-166)||(12199859-12199918)
chr6 (107-164)||(24554088-24554145)
[»] chr8 (4 HSPs)
chr8 (258-301)||(1058224-1058267)
chr8 (102-164)||(29907782-29907844)
chr8 (259-296)||(40981008-40981045)
chr8 (104-164)||(8466544-8466604)
[»] chr5 (2 HSPs)
chr5 (102-164)||(1564623-1564685)
chr5 (259-296)||(24030557-24030594)
[»] scaffold0766 (1 HSPs)
scaffold0766 (107-164)||(6245-6302)
[»] scaffold0692 (1 HSPs)
scaffold0692 (107-164)||(5810-5867)
[»] chr4 (2 HSPs)
chr4 (259-296)||(44138447-44138484)
chr4 (259-296)||(49202534-49202571)
[»] chr2 (1 HSPs)
chr2 (260-296)||(43570305-43570341)


Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 11 - 319
Target Start/End: Original strand, 22203092 - 22203400
Alignment:
Q  11 cacagatcaatttttgtaagcaaaagcaagcaagaatcatttgagtttgatgagaggaaaagcccaaatgaggtaacacccatcacttacttgttaaaga 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22203092 cacagatcaatttttgtaagcaaaagcaagcaagaatcatttgagtttgatgagaggaaaagcccaaatgaggtaacacccatcacttacttgttaaaga 22203191  T
Q  111 gtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatcatgttagttgtattgttctttagtgcatttgattaggcttttactt 210  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  22203192 gtcccacatcggatacgagatagtttcaaaaaatgtttataagtgagggcaatcatgttagttgtgttgtgctttagtgcatttgattaggcttttactt 22203291  T
Q  211 aaactaagaattaaggtcaatcaccatgatgtctgcaacttatctttaataaacagcttatttgcagcttatagtacaagctcttactatgcatgataag 310  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22203292 aaattaagaattaaggtcaatcaccatgatgtctgcaacttatctttaataaacagcttatttgcagcttatagtacaagctcttactatgcatgataag 22203391  T
Q  311 tgcttatac 319  Q
    |||||||||    
T  22203392 tgcttatac 22203400  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 296
Target Start/End: Complemental strand, 35959648 - 35959611
Alignment:
Q  259 ataaacagcttatttgcagcttatagtacaagctctta 296  Q
    |||||||||||||||||||||||||  |||||||||||    
T  35959648 ataaacagcttatttgcagcttatatcacaagctctta 35959611  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 102 - 164
Target Start/End: Original strand, 17468310 - 17468372
Alignment:
Q  102 tgttaaagagtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatc 164  Q
    |||||||||||||||||||||||| ||||| || ||| || ||||||||||||| ||||||||    
T  17468310 tgttaaagagtcccacatcggataagagatggtctgacaatatgtttataagtgggggcaatc 17468372  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 38733353 - 38733410
Alignment:
Q  107 aagagtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatc 164  Q
    ||||||||||||||||||| | ||| || ||| || ||||||||||||||||||||||    
T  38733353 aagagtcccacatcggatatgtgatggtctgacaatatgtttataagtgagggcaatc 38733410  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 102 - 167
Target Start/End: Complemental strand, 52676391 - 52676326
Alignment:
Q  102 tgttaaagagtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatcatg 167  Q
    |||||||||||||||||| ||||| ||||| || |||| || |||||||||||| ||| |||||||    
T  52676391 tgttaaagagtcccacattggataagagatggtatgaacaagtgtttataagtgggggtaatcatg 52676326  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 166
Target Start/End: Original strand, 38668331 - 38668390
Alignment:
Q  107 aagagtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatcat 166  Q
    ||||||||||||||||||| | ||| |||||| ||  |||||||||||| ||||||||||    
T  38668331 aagagtcccacatcggatatgtgatggtttgacaatgtgtttataagtgggggcaatcat 38668390  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 369606 - 369663
Alignment:
Q  107 aagagtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatc 164  Q
    ||||||||||||||||  | |||||||| ||||||  |||||||||||| ||||||||    
T  369606 aagagtcccacatcgggcaggagatagtctgaaaatgtgtttataagtgggggcaatc 369663  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 52961557 - 52961610
Alignment:
Q  111 gtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatc 164  Q
    ||||||||||||||| ||||| || ||| ||  |||||||||||||||||||||    
T  52961557 gtcccacatcggataggagatggtctgacaatgtgtttataagtgagggcaatc 52961610  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 33494510 - 33494567
Alignment:
Q  107 aagagtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatc 164  Q
    ||||||||||||||||||| ||||| | ||||||| ||||||||||||| ||||||||    
T  33494510 aagagtcccacatcggataggagatggcttgaaaatatgtttataagtgggggcaatc 33494567  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 166
Target Start/End: Complemental strand, 12199918 - 12199859
Alignment:
Q  107 aagagtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatcat 166  Q
    ||||||||||||||||||| || || || ||| || ||||||||||||| ||||||||||    
T  12199918 aagagtcccacatcggataagatatggtctgacaatatgtttataagtgggggcaatcat 12199859  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 24554088 - 24554145
Alignment:
Q  107 aagagtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatc 164  Q
    ||||||||||||||||||| ||||| || ||| || || |||||||||| ||||||||    
T  24554088 aagagtcccacatcggataggagatggtctgacaatatatttataagtgggggcaatc 24554145  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 301
Target Start/End: Complemental strand, 1058267 - 1058224
Alignment:
Q  258 aataaacagcttatttgcagcttatagtacaagctcttactatg 301  Q
    ||||||||||||||||||||||||||| |||||| |||||||||    
T  1058267 aataaacagcttatttgcagcttatagcacaagcgcttactatg 1058224  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 164
Target Start/End: Complemental strand, 29907844 - 29907782
Alignment:
Q  102 tgttaaagagtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatc 164  Q
    |||||||||||||||||||||||| |||||||| ||| ||  |||||||||||| || |||||    
T  29907844 tgttaaagagtcccacatcggataagagatagtctgacaatgtgtttataagtggggtcaatc 29907782  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 296
Target Start/End: Original strand, 40981008 - 40981045
Alignment:
Q  259 ataaacagcttatttgcagcttatagtacaagctctta 296  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  40981008 ataaacagcttatttgcagcttatagcacaagcgctta 40981045  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 8466604 - 8466544
Alignment:
Q  104 ttaaagagtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatc 164  Q
    ||||||| |||||||||||||| ||||| || |||| || |||||||||||| ||| ||||    
T  8466604 ttaaagaatcccacatcggataagagatggtctgaacaagtgtttataagtgggggaaatc 8466544  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 164
Target Start/End: Complemental strand, 1564685 - 1564623
Alignment:
Q  102 tgttaaagagtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatc 164  Q
    |||||||||||||||||||||||| ||||| || ||| ||  || ||||||||| ||||||||    
T  1564685 tgttaaagagtcccacatcggataagagatggtctgacaatgtgattataagtgggggcaatc 1564623  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 296
Target Start/End: Complemental strand, 24030594 - 24030557
Alignment:
Q  259 ataaacagcttatttgcagcttatagtacaagctctta 296  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  24030594 ataaacagcttatttgcagcttatagcacaagcactta 24030557  T

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Target: scaffold0766 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0766
Description:

Target: scaffold0766; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 6245 - 6302
Alignment:
Q  107 aagagtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatc 164  Q
    |||||||||||||| |||| |||||||| ||| ||  |||||||||||| ||||||||    
T  6245 aagagtcccacatcagataagagatagtctgacaatgtgtttataagtgggggcaatc 6302  T

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Target: scaffold0692 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 164
Target Start/End: Complemental strand, 5867 - 5810
Alignment:
Q  107 aagagtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatc 164  Q
    ||||||||||||||||||| || ||||| ||| ||  |||||||||||| ||||||||    
T  5867 aagagtcccacatcggataagacatagtctgacaatgtgtttataagtgggggcaatc 5810  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 296
Target Start/End: Original strand, 44138447 - 44138484
Alignment:
Q  259 ataaacagcttatttgcagcttatagtacaagctctta 296  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  44138447 ataaacagcttatttgcagcttttagtacaagcactta 44138484  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 296
Target Start/End: Original strand, 49202534 - 49202571
Alignment:
Q  259 ataaacagcttatttgcagcttatagtacaagctctta 296  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  49202534 ataaacaacttatttgcagcttatagtacaagcactta 49202571  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 296
Target Start/End: Original strand, 43570305 - 43570341
Alignment:
Q  260 taaacagcttatttgcagcttatagtacaagctctta 296  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  43570305 taaacagcttatttgcagcttatagcacaagcactta 43570341  T

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