View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11714_low_31 (Length: 318)
Name: NF11714_low_31
Description: NF11714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11714_low_31 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 7 - 181
Target Start/End: Complemental strand, 14878880 - 14878706
Alignment:
| Q |
7 |
gcaagtaattctcttaatgtttaaagttgagtacgtgtgtatttgtatgagcctttaggctttaaaattgtagagcactaagctataaccgttggaggct |
106 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
14878880 |
gcaaataattctcttaatgtttaaagttgagtacgtgtgtatttgtatgagcctttaggctttaaaattgtagagcagtaagctataaccgttggaggct |
14878781 |
T |
|
| Q |
107 |
tgttgaggtgtctagtccttgttcaagagagagaattagttcacgtttcaatcatactattttttgtattcatat |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14878780 |
tgttgaggtgtctagtccttgttcaagagagagaattagttcacgtttcaatcatactattttttgtattcatat |
14878706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 165 - 277
Target Start/End: Complemental strand, 14878691 - 14878578
Alignment:
| Q |
165 |
attttttgtattcatatcatcataacatttgttacaagttgtacnnnnnnnn-tataacataattagaaataaaggaaaattaatactaatgaatatttg |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14878691 |
attttttgtattcatatcatcataacatttgttacaagttgtacaaaaaaaaatataacataattagaaataaaggaaaattaatactaatgaatatttg |
14878592 |
T |
|
| Q |
264 |
aaataggtccttaa |
277 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
14878591 |
aaataggtccttaa |
14878578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University