View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11714_low_32 (Length: 310)

Name: NF11714_low_32
Description: NF11714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11714_low_32
NF11714_low_32
[»] chr5 (3 HSPs)
chr5 (24-291)||(41871650-41871917)
chr5 (28-90)||(6061531-6061593)
chr5 (30-64)||(12349548-12349582)
[»] chr2 (3 HSPs)
chr2 (24-64)||(14120827-14120867)
chr2 (29-66)||(34512716-34512753)
chr2 (24-64)||(1729549-1729589)
[»] chr4 (2 HSPs)
chr4 (28-82)||(39418104-39418158)
chr4 (28-96)||(44478770-44478838)
[»] chr3 (4 HSPs)
chr3 (24-82)||(29213346-29213404)
chr3 (28-64)||(4298407-4298443)
chr3 (28-92)||(12060035-12060099)
chr3 (28-96)||(50673149-50673217)
[»] chr8 (5 HSPs)
chr8 (28-92)||(5074900-5074964)
chr8 (28-85)||(39972135-39972192)
chr8 (4-32)||(67213-67241)
chr8 (31-91)||(13520690-13520750)
chr8 (31-91)||(13610225-13610285)
[»] chr7 (1 HSPs)
chr7 (47-85)||(33901337-33901375)
[»] chr6 (1 HSPs)
chr6 (28-82)||(31490671-31490725)
[»] chr1 (3 HSPs)
chr1 (27-83)||(21268277-21268333)
chr1 (27-83)||(36596648-36596704)
chr1 (28-64)||(40289163-40289199)


Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 24 - 291
Target Start/End: Complemental strand, 41871917 - 41871650
Alignment:
Q  24 ttttcaatacaacatttttaaatttgtcctattaaccaatgtccaaaagacactctttagcacttccctaaaataacacttgttcctctcaagaagaaat 123  Q
    |||| |||||||||||||||||||||| || |||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41871917 tttttaatacaacatttttaaatttgtgctcttaaccaatgtccaatggacactctttaacacttccctaaaataacacttgttcctctcaagaagaaat 41871818  T
Q  124 ataaagaccagttgatgcctcctagaaactaaatatatttt-ttctgagttggatcataaagctcgtcaaaccacgatagactttaaagttcacaaaacg 222  Q
    |||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41871817 ataaagactagttgatgcctc-tagaaactaaatatattttcttctgagttggatcataaagctcgtcaaaccacgacagactttaaagttcacaaaacg 41871719  T
Q  223 gtgaaagagatgcgcatacaaattactcagcaacgaaatcttcatgttgttaaagggagtaggactcat 291  Q
    || |||||||| |||||||||||||| || ||||||||||||||||| |||| ||||||||||||||||    
T  41871718 gtaaaagagatacgcatacaaattacccatcaacgaaatcttcatgtcgttagagggagtaggactcat 41871650  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 6061531 - 6061593
Alignment:
Q  28 caatacaacatttttaaatttgtcctattaaccaatgtccaaaagacactctttagcacttcc 90  Q
    ||||||||||||| |||||||  | | ||||||||||||| ||||||| ||||||||| ||||    
T  6061531 caatacaacatttctaaattttccatcttaaccaatgtcctaaagacattctttagcatttcc 6061593  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 64
Target Start/End: Complemental strand, 12349582 - 12349548
Alignment:
Q  30 atacaacatttttaaatttgtcctattaaccaatg 64  Q
    |||||||||||||||||||||||| ||||||||||    
T  12349582 atacaacatttttaaatttgtcctcttaaccaatg 12349548  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 14120867 - 14120827
Alignment:
Q  24 ttttcaatacaacatttttaaatttgtcctattaaccaatg 64  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  14120867 ttttcaatacaacatttttaaatttgtcctcttaaccaatg 14120827  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 34512716 - 34512753
Alignment:
Q  29 aatacaacatttttaaatttgtcctattaaccaatgtc 66  Q
    |||||||||||| |||||||||||| ||||||||||||    
T  34512716 aatacaacatttctaaatttgtcctcttaaccaatgtc 34512753  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 1729549 - 1729589
Alignment:
Q  24 ttttcaatacaacatttttaaatttgtcctattaaccaatg 64  Q
    ||||||||||||||||| ||| |||||||| ||||||||||    
T  1729549 ttttcaatacaacatttctaagtttgtcctcttaaccaatg 1729589  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 39418158 - 39418104
Alignment:
Q  28 caatacaacatttttaaatttgtcctattaaccaatgtccaaaagacactcttta 82  Q
    ||||||||||||| ||||||||| || ||||||||||||| || |||||||||||    
T  39418158 caatacaacatttctaaatttgtactcttaaccaatgtcctaaggacactcttta 39418104  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 44478770 - 44478838
Alignment:
Q  28 caatacaacatttttaaatttgtcctattaaccaatgtccaaaagacactctttagcacttccctaaaa 96  Q
    ||||||||||||||||| |||||||| ||||| |||||  ||| ||||||||||| || || |||||||    
T  44478770 caatacaacatttttaagtttgtcctcttaacaaatgttgaaaggacactctttaacattttcctaaaa 44478838  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 29213404 - 29213346
Alignment:
Q  24 ttttcaatacaacatttttaaatttgtcctattaaccaatgtccaaaagacactcttta 82  Q
    ||||||||| ||| ||| ||||||||||||||||||||||| || || |||||||||||    
T  29213404 ttttcaatataacgtttctaaatttgtcctattaaccaatgccctaaggacactcttta 29213346  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 4298407 - 4298443
Alignment:
Q  28 caatacaacatttttaaatttgtcctattaaccaatg 64  Q
    |||||||||||||||||||||||| | ||||||||||    
T  4298407 caatacaacatttttaaatttgtcattttaaccaatg 4298443  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 12060099 - 12060035
Alignment:
Q  28 caatacaacatttttaaatttgtcctattaaccaatgtccaaaagacactctttagcacttccct 92  Q
    |||||||| |||| |||||||||||| |||||||||  || |||| ||||||||| || ||||||    
T  12060099 caatacaatatttctaaatttgtcctcttaaccaataccccaaaggcactctttaacatttccct 12060035  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 50673149 - 50673217
Alignment:
Q  28 caatacaacatttttaaatttgtcctattaaccaatgtccaaaagacactctttagcacttccctaaaa 96  Q
    |||||||||||||||||||||  | | |||||||||| || || | |||||||||||| |||| |||||    
T  50673149 caatacaacatttttaaatttaccttcttaaccaatgccctaagggcactctttagcatttccataaaa 50673217  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 5074900 - 5074964
Alignment:
Q  28 caatacaacatttttaaatttgtcctattaaccaatgtccaaaagacactctttagcacttccct 92  Q
    ||||||||||||| ||| |||||| | |||||||||| || |||| |||||||||||| ||||||    
T  5074900 caatacaacatttctaagtttgtcatcttaaccaatgccctaaaggcactctttagcatttccct 5074964  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 39972192 - 39972135
Alignment:
Q  28 caatacaacatttttaaatttgtcctattaaccaatgtccaaaagacactctttagca 85  Q
    ||||||||||||| |||||||||| | |||||||||| || || | ||||||||||||    
T  39972192 caatacaacatttctaaatttgtcttcttaaccaatgccctaagggcactctttagca 39972135  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 67213 - 67241
Alignment:
Q  4 ttgtacaaatatcatttctcttttcaata 32  Q
    |||||||||||||||||||||||||||||    
T  67213 ttgtacaaatatcatttctcttttcaata 67241  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 13520690 - 13520750
Alignment:
Q  31 tacaacatttttaaatttgtcctattaaccaatgtccaaaagacactctttagcacttccc 91  Q
    |||||||||| ||||||| |||| ||||||||||||  || |||||| ||||||| |||||    
T  13520690 tacaacatttctaaatttatccttttaaccaatgtcttaaggacactttttagcatttccc 13520750  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 13610225 - 13610285
Alignment:
Q  31 tacaacatttttaaatttgtcctattaaccaatgtccaaaagacactctttagcacttccc 91  Q
    |||||||||| ||||||| |||| ||||||||||||  || |||||| ||||||| |||||    
T  13610225 tacaacatttctaaatttatccttttaaccaatgtcttaaggacactttttagcatttccc 13610285  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 33901337 - 33901375
Alignment:
Q  47 ttgtcctattaaccaatgtccaaaagacactctttagca 85  Q
    |||| |||||||||||||||| |||||||||||||||||    
T  33901337 ttgttctattaaccaatgtcctaaagacactctttagca 33901375  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 31490725 - 31490671
Alignment:
Q  28 caatacaacatttttaaatttgtcctattaaccaatgtccaaaagacactcttta 82  Q
    ||||||| ||||||||| |||||||| ||||||||||||| || | |||||||||    
T  31490725 caatacatcatttttaagtttgtcctcttaaccaatgtcctaagggcactcttta 31490671  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 21268333 - 21268277
Alignment:
Q  27 tcaatacaacatttttaaatttgtcctattaaccaatgtccaaaagacactctttag 83  Q
    |||||||||||||| ||| |||||||| |||||||||| || || | ||||||||||    
T  21268333 tcaatacaacatttctaagtttgtcctcttaaccaatgccctaagggcactctttag 21268277  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 36596648 - 36596704
Alignment:
Q  27 tcaatacaacatttttaaatttgtcctattaaccaatgtccaaaagacactctttag 83  Q
    |||||||||||||| ||| |||||| | |||| |||||||| |||| ||||||||||    
T  36596648 tcaatacaacatttctaagtttgtcttcttaatcaatgtcctaaaggcactctttag 36596704  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 40289163 - 40289199
Alignment:
Q  28 caatacaacatttttaaatttgtcctattaaccaatg 64  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  40289163 caatacaacatttttaaatttatcctcttaaccaatg 40289199  T

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