View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11714_low_33 (Length: 303)
Name: NF11714_low_33
Description: NF11714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11714_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 40405875 - 40406140
Alignment:
| Q |
18 |
cttgactgatgtcagttttgacttatgacaatttcaaggatagacaaatatatgtgcttcaaaactaaatctgtattcgctttttcatgattttgccaaa |
117 |
Q |
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| T |
40405875 |
cttgactgatgtcagttttgacttatgacaaattcaaggatagacaaatatatgtgcttcaaaactaaatttgtattcgctttttcatgattttaccaaa |
40405974 |
T |
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| Q |
118 |
ccgacatcgatcatatcacagtcttagtagtaaggcgagaggactctagacttgtaaacttttacttctaaggaccaactattagcagatccaccttgtt |
217 |
Q |
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| T |
40405975 |
cagacatcgatcatatcacagtcg--gtagtaaggcgagaggactctagacttgtaaacttttacttctaaggaccaactattagcagatccaccttgtt |
40406072 |
T |
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| Q |
218 |
ttgttaggctttagaactcttatattgtttatgtttgctaatatgcttgaatacaagaatagtccatg |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40406073 |
ttgttaggctttagaactcttatattgtttatgtttgctaatatgcttgaatacaagaatagtccatg |
40406140 |
T |
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