View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11714_low_34 (Length: 299)
Name: NF11714_low_34
Description: NF11714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11714_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 278
Target Start/End: Original strand, 43408960 - 43409219
Alignment:
| Q |
19 |
aagtagtggtgcatcaggttgtggtgtttcaactatgagttgctgcatatcaacggttgattcagcttgttatgttggtgacatggatgtattgggattc |
118 |
Q |
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| T |
43408960 |
aagtagtggtgcatcaggttgtggtgtttcaactatgagttgctgcatatcaacggttgattcagcttgttatgttggtgacatggatgtattgggattc |
43409059 |
T |
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| Q |
119 |
caagaagcgtgcagtgagtatcacctttttaatggacaaggaatagtaggaacagccttcacaacaaccaaaccttgttttgctattgatattactgcct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43409060 |
caagaagcgtgcagtgagtatcacctttttaatggacaaggaatagtaggaacagccttcacaacaaccaaaccttgttttgctattgatattactgcct |
43409159 |
T |
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| Q |
219 |
tcagcaaatctgaatatccacttgctcaccatgccaacatgtttggcttacacgctgctg |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43409160 |
tcagcaaatctgaatatccacttgctcaccatgccaacatgtttggcttacacgctgctg |
43409219 |
T |
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