View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11714_low_36 (Length: 294)
Name: NF11714_low_36
Description: NF11714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11714_low_36 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 99 - 200
Target Start/End: Complemental strand, 17221399 - 17221298
Alignment:
| Q |
99 |
ttatccaagccatcacaacctttgtttatctttgcatttgtggaactaatgggatgatttatgatctcaaacgtttaagtgtagagcatttaacaattga |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17221399 |
ttatccaagccatcacaacctttgtttatctttgcatttgtggaactaatgggatgattgatgatctcaaacgtttaagtgtagagcatttaacaattga |
17221300 |
T |
|
| Q |
199 |
ag |
200 |
Q |
| |
|
|| |
|
|
| T |
17221299 |
ag |
17221298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 196 - 272
Target Start/End: Complemental strand, 17221008 - 17220932
Alignment:
| Q |
196 |
tgaagccaaacatatttcaccttccctgtgtcccattcaccccggaaagtttctatttgtggttgaaacacaaacct |
272 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
17221008 |
tgaagccaaacatatttcaccttccttgtgtcccattcgccccgaaaagtttctatttgtggttgaaacacaaacct |
17220932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 197 - 272
Target Start/End: Complemental strand, 17212266 - 17212191
Alignment:
| Q |
197 |
gaagccaaacatatttcaccttccctgtgtcccattcaccccggaaagtttctatttgtggttgaaacacaaacct |
272 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
17212266 |
gaagccaaatatatttcaccttccctgtgtcccattcgccctggaaagtttctatttgtggttgaaacacaaacct |
17212191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 17222247 - 17222203
Alignment:
| Q |
1 |
tatatttgactatttgaggttggttaatattaaccatctcaacaa |
45 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
17222247 |
tatatttgactatttgaggttggttaatatcaaccatctcaacaa |
17222203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 17212715 - 17212658
Alignment:
| Q |
49 |
taagaatatcatcccaaattttctatttctataaacagttgttagaagatttatccaa |
106 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||| ||||||||| | |||||||| |
|
|
| T |
17212715 |
taagaatatcatttcaatttttctatttctataaacacttgttagaaaagttatccaa |
17212658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University