View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11714_low_39 (Length: 288)
Name: NF11714_low_39
Description: NF11714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11714_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 10 - 272
Target Start/End: Complemental strand, 38780592 - 38780331
Alignment:
| Q |
10 |
tgagcacagacatatatattacccgaatcccctggacctagtggtactgtagagtagaatgactccaaaacaaacatacaaaaaagccagttctttcatt |
109 |
Q |
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| T |
38780592 |
tgagcacaaacatatatattacccgaatcccctggacctagtggtactgtagagtagaatgactccaaaacaaacatacaaaaaagccagttctttcatt |
38780493 |
T |
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| Q |
110 |
ttctaaataataacgcccatattccaaatttatctaacttgcacctttggtcnnnnnnnctaacctgcacttgtggctatgaatgatcagtatgttaaac |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
38780492 |
ttctaaataataacgcccatattccaaatttatctaacttgcacctttggtcaaaaaaactaacctgcacttgtggctatgaatgatcagtatgtcaaac |
38780393 |
T |
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| Q |
210 |
ataaatccgtgtactttttctttggttggctaagaattaagacatgtggttttagtttacttt |
272 |
Q |
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| T |
38780392 |
ataaatccgtgtactttttctttggttggctaagaattaagacatgtgg-tttagtttacttt |
38780331 |
T |
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