View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11714_low_4 (Length: 652)
Name: NF11714_low_4
Description: NF11714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11714_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 227 - 646
Target Start/End: Original strand, 42326260 - 42326679
Alignment:
| Q |
227 |
tactgtagagatggattaagcatgttgatcgtcgtctaataacatgcacctcccctgaccgttgatcagcatgcttgatccatctcttactaccaccacg |
326 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
42326260 |
tactatagagatggattaagcatgttgattatcgtctaataacatgcacctctcctgaccgttgatcaacatgcttaatccatctcttactaccaccacg |
42326359 |
T |
|
| Q |
327 |
accatgaccatcttttcccaaattacccccaacagctgaaacatgtgctatgtcaagtcccttcccaacaggaagaaacaccgacctaacaacacgacgt |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42326360 |
accatgaccatcttttcccaaattacccccaacagctgaaacatgtgctatgtcaagtcccttcccaacaggaagaaacaccgacctaacaacacgacgt |
42326459 |
T |
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| Q |
427 |
gaccttgatcctccttcctcaacaacaatattctcccatttaaaattcccactcctaaaattaacattcttacatatcaaaactgcacccttaacactta |
526 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42326460 |
gaccttgatcctccttcctcaacaacaatattctcccatttaaaattcccactcctaaaattaacattcttacatatcaaaactgcacccttaacactta |
42326559 |
T |
|
| Q |
527 |
acttagccaccttcaaaaccttcatcaaatccttaattccttcacaatctaccaccatgaaatctatctcttcaatgaaatctttcataacttcttctgc |
626 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42326560 |
acttagccaccttcaaaaccttcatcaaatccttaattccttcacaatctaccaccatgaaatctatctcttcaatgaaatctttcataacttcttctgc |
42326659 |
T |
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| Q |
627 |
ttctcctacaatgatctctg |
646 |
Q |
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||||||||||||||| |||| |
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| T |
42326660 |
ttctcctacaatgatttctg |
42326679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 42326050 - 42326218
Alignment:
| Q |
17 |
actttataatctgacttactcaaatgaatatttcaaaattatattttgctataactttggttttttataaacgtgttaaaacaattggggctatagattg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42326050 |
actttataatctgacttactcaaatgaatatttcaaaattatattttgctataactttggttttttataaacgtgttaaaacaattggggctatagattg |
42326149 |
T |
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| Q |
117 |
ataagaataaagaaatataatgatttgtagcaagtagcatacaacaaatataatttgtcagcctattta |
185 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42326150 |
ataagaataaagaaatataatgatttgtagcaagtagcataccacaaatataatttgtcagcctattta |
42326218 |
T |
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