View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11714_low_41 (Length: 263)
Name: NF11714_low_41
Description: NF11714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11714_low_41 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 14 - 263
Target Start/End: Original strand, 8755219 - 8755468
Alignment:
| Q |
14 |
agaggacaatccaaagtactgtaaagaggatcatgaatgttgacattgaagccgcggggatttcaaagttcgaaaatatgttacggttcatggtggatgc |
113 |
Q |
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| T |
8755219 |
agaggacaatccaaagtactgtaaagaggatcatgaatgttgacattgaagccgcggggatttcaaagttcgaaaatatgttacggttcatggtggatgc |
8755318 |
T |
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| Q |
114 |
ttccaatacagaaaatgttccttgactaaaatttatagacattatcattcctgttgtccaaattggaatgattttgataattgctttgaatgcttctact |
213 |
Q |
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| T |
8755319 |
ttccaatacagaaaatgttccttgactaaaatttatagacattatcattcctgttgtccaaattggaatgattttgataattgctttgaatgcttctact |
8755418 |
T |
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| Q |
214 |
tgatctattgtgcaaaggctccattgattttttaatcttccatcttgtgt |
263 |
Q |
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| T |
8755419 |
tgatctattgtgcaaaggctccattgattttttaatcttccatcttgtgt |
8755468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 14 - 263
Target Start/End: Original strand, 8747876 - 8748125
Alignment:
| Q |
14 |
agaggacaatccaaagtactgtaaagaggatcatgaatgttgacattgaagccgcggggatttcaaagttcgaaaatatgttacggttcatggtggatgc |
113 |
Q |
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| T |
8747876 |
agaggacaatccaaattactacagagaggaccatgaatgttgacattgaagccgcggggatttcaaagttcgaagttatgtggcggttcatggtggatgc |
8747975 |
T |
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| Q |
114 |
ttccaatacagaaaatgttccttgactaaaatttatagacattatcattcctgttgtccaaattggaatgattttgataattgctttgaatgcttctact |
213 |
Q |
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| T |
8747976 |
ttctagtatattaaatgttccttgactcaaatttatagacattatcattcctgttgtccaaattggaatgattttgataattgctttgaatgcttctact |
8748075 |
T |
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| Q |
214 |
tgatctattgtgcaaaggctccattgattttttaatcttccatcttgtgt |
263 |
Q |
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| T |
8748076 |
tgatctattgtgctaaggctccattggttttttaatcttctatcttgtgt |
8748125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 8765758 - 8765988
Alignment:
| Q |
14 |
agaggacaatccaaagtactgtaaagaggatcatgaatgttgacattgaagccgcggggatttcaaagttcgaaaatatgttacggttcatggtggatgc |
113 |
Q |
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| T |
8765758 |
agaggacaagccatagtacagtaaagagaaccatgaatgttgccactgaagctgcggggatttcgaagttcgaagtaatgtggcggttcatggaggatgc |
8765857 |
T |
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| Q |
114 |
ttccaatacagaaaatgttccttgactaaaatttatagacattatcattcctgttgtccaaattggaatgattttgataattgctttgaatgcttctact |
213 |
Q |
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||| | |||| |||||||||||||||| | ||| ||| ||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
8765858 |
ttctagtacataaaatgttccttgactcatattaatatacattatcattcctgttatccaaattgggatgattttgatcattgctttgaatgcttctact |
8765957 |
T |
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| Q |
214 |
tgatctattgtgcaaaggctccattgatttt |
244 |
Q |
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| T |
8765958 |
tgatctattgtgcaatggctccattggtttt |
8765988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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