View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11714_low_42 (Length: 262)
Name: NF11714_low_42
Description: NF11714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11714_low_42 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 44703971 - 44704213
Alignment:
| Q |
1 |
aaaaccaggcttaacacaaagagataacacttcttttccaagcataacacctgtggtggggtccactttgcgatgaatctcagctacgttttccttcatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44703971 |
aaaaccaggcttaacacaaagagataacacttcttttccaagcataacacctgtggtggggtccactttgcgatgaatctcagctacgttttccttcatt |
44704070 |
T |
|
| Q |
101 |
gcgttaaaaacggtgcaacaacgttgagagaagcaaccttcaatgtggtactcctcaccagggttatcgtacacctccactgttactccagtacgtgctc |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44704071 |
ccgttaaaaaccgtgcaacaacgttgagagaagcaaccttcaatgtggtactcctcaccagggttatcgtacacctccactgttactccagtacgtgctc |
44704170 |
T |
|
| Q |
201 |
gtccgatcattgatgatctcttcacgctgaaggtaggtttatc |
243 |
Q |
| |
|
|||||||||| ||||| |||||||| ||||||||||||||||| |
|
|
| T |
44704171 |
gtccgatcatagatgacctcttcacactgaaggtaggtttatc |
44704213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 44714674 - 44714916
Alignment:
| Q |
1 |
aaaaccaggcttaacacaaagagataacacttcttttccaagcataacacctgtggtggggtccactttgcgatgaatctcagctacgttttccttcatt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| || |||||| || |||||| |||||||||||||| |||| ||||||||| || |||||||||| |
|
|
| T |
44714674 |
aaaaccaggcttaacacaaagagagaacacttccttcccaagcgtattacctgtagtggggtccactttacgataaatctcagccacaatttccttcatc |
44714773 |
T |
|
| Q |
101 |
gcgttaaaaacggtgcaacaacgttgagagaagcaaccttcaatgtggtactcctcaccagggttatcgtacacctccactgttactccagtacgtgctc |
200 |
Q |
| |
|
||||||||||| |||||| |||||||||||| || ||||| || |||||||||||||| ||||||||||||||||||||||| ||||| | ||||| || |
|
|
| T |
44714774 |
gcgttaaaaactttgcaaccacgttgagagaaacacccttcgatatggtactcctcacctgggttatcgtacacctccactgtcactcccgcacgtggtc |
44714873 |
T |
|
| Q |
201 |
gtccgatcattgatgatctcttcacgctgaaggtaggtttatc |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
44714874 |
gtccgatcattgatgatctcttcacgctgaaggttggtttatc |
44714916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 185
Target Start/End: Complemental strand, 2278213 - 2278054
Alignment:
| Q |
26 |
aacacttcttttccaagcataacacctgtggtggggtccactttgcgatgaatctcagctacgttttccttcattgcgttaaaaacggtgcaacaacgtt |
125 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||||| ||| |||||||||| || || ||| | || ||||||| | || || | || |
|
|
| T |
2278213 |
aacacttctttcccaagcataacactagtggtggggtccactttacgacgaatctcagccactaatttctttgtggcattaaaaatcttacagcatcttt |
2278114 |
T |
|
| Q |
126 |
gagagaagcaaccttcaatgtggtactcctcaccagggttatcgtacacctccactgtta |
185 |
Q |
| |
|
| | ||| || ||||||||| |||||||| |||| |||||||||| ||||||||||||| |
|
|
| T |
2278113 |
gtgggaaacacccttcaatgaggtactccacacctgggttatcgtgtacctccactgtta |
2278054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University