View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11714_low_45 (Length: 245)
Name: NF11714_low_45
Description: NF11714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11714_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 14 - 229
Target Start/End: Original strand, 25153059 - 25153274
Alignment:
| Q |
14 |
caaaggtttaggacaatttagttgacaagttttcttgtcgataaaacaaggataaggataatctgtaatgtataacaagaagtaaggagtgttaattaaa |
113 |
Q |
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| T |
25153059 |
caaaggtttaggacaatttagttgacaagttttcttgtcaacaaaacaaggataaggataatctgtaatgtataacaagaagtaaggagtgttaattaaa |
25153158 |
T |
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| Q |
114 |
atgtataaaaggttgtgaataaagtagtgcataaacttttagaaattaaaatagagaaagggaataccagagtttacaaccctaacaagaaaaaataaga |
213 |
Q |
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| T |
25153159 |
atgtataaaaggttgtgaataaagtagggcaaaaactttgagaaattaaaatagagaaagggaataccagagtttacaaccctaacaagaaaaaataaga |
25153258 |
T |
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| Q |
214 |
aaacaaagaagatcat |
229 |
Q |
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|||||||||||||||| |
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| T |
25153259 |
aaacaaagaagatcat |
25153274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 73 - 229
Target Start/End: Original strand, 25147859 - 25148014
Alignment:
| Q |
73 |
aatctgtaatgtataacaagaagtaaggagtgttaattaaaatgtataaaaggttgtgaataaagtagtgcataaacttttagaaattaaaatagagaaa |
172 |
Q |
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||||||| ||||||||||||||||| |||||||| | |||||| |||||| |||||| ||||||||||||| ||||| | ||||||||||||||||||| |
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| T |
25147859 |
aatctgtgttgtataacaagaagtaaagagtgtta-tgaaaatgaataaaaagttgtgcataaagtagtgcaaaaactctgagaaattaaaatagagaaa |
25147957 |
T |
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| Q |
173 |
gggaataccagagtttacaaccctaacaagaaaaaataagaaaacaaagaagatcat |
229 |
Q |
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| T |
25147958 |
gacattaccagagtttacaaccctaacaagaaaaaatatgaaaacaaacaagatcat |
25148014 |
T |
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