View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11714_low_46 (Length: 245)

Name: NF11714_low_46
Description: NF11714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11714_low_46
NF11714_low_46
[»] chr2 (8 HSPs)
chr2 (149-235)||(23347857-23347943)
chr2 (149-232)||(18354184-18354267)
chr2 (149-227)||(12742808-12742886)
chr2 (149-217)||(10328216-10328284)
chr2 (176-232)||(2040289-2040345)
chr2 (206-235)||(30045029-30045058)
chr2 (206-235)||(30050192-30050221)
chr2 (206-235)||(30141236-30141265)
[»] scaffold0096 (1 HSPs)
scaffold0096 (149-235)||(32538-32624)
[»] chr5 (6 HSPs)
chr5 (149-235)||(9044961-9045047)
chr5 (149-235)||(22002929-22003015)
chr5 (149-235)||(32872016-32872102)
chr5 (149-234)||(30441473-30441558)
chr5 (149-232)||(7472385-7472468)
chr5 (149-235)||(30442773-30442859)
[»] chr3 (18 HSPs)
chr3 (149-235)||(37984909-37984995)
chr3 (149-235)||(12531275-12531362)
chr3 (149-232)||(19769720-19769803)
chr3 (149-235)||(31687695-31687781)
chr3 (149-235)||(17689493-17689579)
chr3 (166-232)||(24758882-24758948)
chr3 (166-232)||(24767879-24767945)
chr3 (166-232)||(24813193-24813259)
chr3 (166-232)||(24827066-24827132)
chr3 (149-217)||(19881300-19881368)
chr3 (166-232)||(53024788-53024854)
chr3 (149-217)||(53972476-53972544)
chr3 (173-223)||(33648248-33648298)
chr3 (166-232)||(53352053-53352119)
chr3 (162-226)||(24124720-24124785)
chr3 (176-235)||(50835518-50835577)
chr3 (176-235)||(50840276-50840335)
chr3 (204-234)||(47761408-47761438)
[»] chr7 (7 HSPs)
chr7 (149-235)||(43070259-43070345)
chr7 (149-232)||(26906644-26906727)
chr7 (149-235)||(14232037-14232123)
chr7 (149-233)||(1264762-1264846)
chr7 (149-233)||(48847092-48847176)
chr7 (176-232)||(11646835-11646891)
chr7 (176-232)||(13764807-13764863)
[»] scaffold0035 (1 HSPs)
scaffold0035 (149-235)||(37109-37195)
[»] chr8 (7 HSPs)
chr8 (149-235)||(8163957-8164042)
chr8 (149-235)||(14672450-14672536)
chr8 (149-233)||(27535377-27535462)
chr8 (3-81)||(42312300-42312378)
chr8 (176-235)||(1848851-1848910)
chr8 (176-235)||(11730388-11730447)
chr8 (176-235)||(23740700-23740759)
[»] chr6 (7 HSPs)
chr6 (149-235)||(21999241-21999327)
chr6 (150-235)||(31891360-31891445)
chr6 (1-68)||(20909199-20909266)
chr6 (1-68)||(20923647-20923714)
chr6 (176-225)||(27447091-27447140)
chr6 (178-222)||(22681837-22681881)
chr6 (178-235)||(25169690-25169747)
[»] chr4 (3 HSPs)
chr4 (149-235)||(29861344-29861430)
chr4 (180-232)||(24262617-24262669)
chr4 (176-222)||(17404859-17404905)
[»] chr1 (4 HSPs)
chr1 (149-235)||(25226807-25226893)
chr1 (1-81)||(41326084-41326164)
chr1 (11-81)||(47247043-47247113)
chr1 (176-222)||(32437583-32437629)
[»] scaffold0045 (1 HSPs)
scaffold0045 (149-233)||(10192-10275)
[»] scaffold0596 (1 HSPs)
scaffold0596 (149-217)||(1516-1584)
[»] scaffold0003 (2 HSPs)
scaffold0003 (176-225)||(40218-40267)
scaffold0003 (176-232)||(33590-33646)


Alignment Details
Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 149 - 235
Target Start/End: Original strand, 23347857 - 23347943
Alignment:
Q  149 gtatttaagggcatacaaaatattgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatcccc 235  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  23347857 gtatttaagggcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaatcccc 23347943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 18354184 - 18354267
Alignment:
Q  149 gtatttaagggcatacaaaatattgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatc 232  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  18354184 gtatttaagggcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaatc 18354267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 149 - 227
Target Start/End: Complemental strand, 12742886 - 12742808
Alignment:
Q  149 gtatttaagggcatacaaaatattgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttgata 227  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  12742886 gtatttaagggcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgata 12742808  T

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Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 149 - 217
Target Start/End: Original strand, 10328216 - 10328284
Alignment:
Q  149 gtatttaagggcatacaaaatattgggtcacacattttcaaatatctccttataaactacatttgaagt 217  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  10328216 gtatttaagggcatacaaaatattgggtcacacattttcgaatatctctttataaactacatttgaagt 10328284  T

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Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 2040289 - 2040345
Alignment:
Q  176 tcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatc 232  Q
    ||||||||||| ||||||||| ||||| ||||||||||||||||| |||||||||||    
T  2040289 tcacacattttgaaatatctctttatacactacatttgaagtggttttgatacaatc 2040345  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 235
Target Start/End: Original strand, 30045029 - 30045058
Alignment:
Q  206 tacatttgaagtggtgttgatacaatcccc 235  Q
    ||||||||||||||||||||||||||||||    
T  30045029 tacatttgaagtggtgttgatacaatcccc 30045058  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 235
Target Start/End: Original strand, 30050192 - 30050221
Alignment:
Q  206 tacatttgaagtggtgttgatacaatcccc 235  Q
    ||||||||||||||||||||||||||||||    
T  30050192 tacatttgaagtggtgttgatacaatcccc 30050221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 235
Target Start/End: Original strand, 30141236 - 30141265
Alignment:
Q  206 tacatttgaagtggtgttgatacaatcccc 235  Q
    ||||||||||||||||||||||||||||||    
T  30141236 tacatttgaagtggtgttgatacaatcccc 30141265  T

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Target: scaffold0096 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 149 - 235
Target Start/End: Complemental strand, 32624 - 32538
Alignment:
Q  149 gtatttaagggcatacaaaatattgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatcccc 235  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||    
T  32624 gtatttaagggcatacaaaatattgggtcacacattttcgaatatctccttttaaactacatttgaagtggtgctgatacaatcccc 32538  T

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Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 149 - 235
Target Start/End: Complemental strand, 9045047 - 9044961
Alignment:
Q  149 gtatttaagggcatacaaaatattgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatcccc 235  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  9045047 gtatttaagggcatacaaaatattgggtcacagattttcgaatatctccttataaactacatttgaagtggtgctgatacaatcccc 9044961  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 149 - 235
Target Start/End: Original strand, 22002929 - 22003015
Alignment:
Q  149 gtatttaagggcatacaaaatattgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatcccc 235  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  22002929 gtatttaagggcatacaaaatattgggtcacacgttttcgaatatctccttataaactacatttgaagtggtgctgatacaatcccc 22003015  T

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Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 149 - 235
Target Start/End: Complemental strand, 32872102 - 32872016
Alignment:
Q  149 gtatttaagggcatacaaaatattgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatcccc 235  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||    
T  32872102 gtatttaagggcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggcgctgatacaatcccc 32872016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 149 - 234
Target Start/End: Original strand, 30441473 - 30441558
Alignment:
Q  149 gtatttaagggcatacaaaatattgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatccc 234  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  30441473 gtatttaagagcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaatccc 30441558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 7472385 - 7472468
Alignment:
Q  149 gtatttaagggcatacaaaatattgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatc 232  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  7472385 gtatttaagggtatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaatc 7472468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 149 - 235
Target Start/End: Original strand, 30442773 - 30442859
Alignment:
Q  149 gtatttaagggcatacaaaatattgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatcccc 235  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  | |||||||||||    
T  30442773 gtatttaagggcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtccttatacaatcccc 30442859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 149 - 235
Target Start/End: Complemental strand, 37984995 - 37984909
Alignment:
Q  149 gtatttaagggcatacaaaatattgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatcccc 235  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||    
T  37984995 gtatttaagggcatacaaaatattgggtcacacattttcgaatatcttcttataaactacatttgaagtggtgctgatacaatcccc 37984909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 149 - 235
Target Start/End: Original strand, 12531275 - 12531362
Alignment:
Q  149 gtatttaagggcatacaaaatattgggtcacacattttcaaatatctccttataaactacatttg-aagtggtgttgatacaatcccc 235  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||    
T  12531275 gtatttaagggcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaaagtggtgctgatacaatcccc 12531362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 149 - 232
Target Start/End: Complemental strand, 19769803 - 19769720
Alignment:
Q  149 gtatttaagggcatacaaaatattgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatc 232  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  19769803 gtatttaagggcatacaaaatattgaatcacacattttcaaatatctccttataaactacatttgaagtggtgctgatacaatc 19769720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 149 - 235
Target Start/End: Complemental strand, 31687781 - 31687695
Alignment:
Q  149 gtatttaagggcatacaaaatattgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatcccc 235  Q
    |||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||    
T  31687781 gtatttaaggccatacaaaatattgggtcacacattttcgaatatttccttataaactacatttgaagtggtgctgatacaatcccc 31687695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 149 - 235
Target Start/End: Complemental strand, 17689579 - 17689493
Alignment:
Q  149 gtatttaagggcatacaaaatattgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatcccc 235  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| ||||| |||||||    
T  17689579 gtatttaagggcatacaaaatattgggtcacacattttcgaatatttccttataaactacatttgaaatggtgctgatataatcccc 17689493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 24758882 - 24758948
Alignment:
Q  166 aaatattgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatc 232  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24758882 aaattttgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttaatacaatc 24758948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 24767879 - 24767945
Alignment:
Q  166 aaatattgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatc 232  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24767879 aaattttgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttaatacaatc 24767945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 24813259 - 24813193
Alignment:
Q  166 aaatattgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatc 232  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24813259 aaattttgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttaatacaatc 24813193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 24827132 - 24827066
Alignment:
Q  166 aaatattgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatc 232  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24827132 aaattttgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttaatacaatc 24827066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 149 - 217
Target Start/End: Original strand, 19881300 - 19881368
Alignment:
Q  149 gtatttaagggcatacaaaatattgggtcacacattttcaaatatctccttataaactacatttgaagt 217  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  19881300 gtatttaaaggcatacaaaatattgggtcacacattttcgaatatctctttataaactacatttgaagt 19881368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 53024788 - 53024854
Alignment:
Q  166 aaatattgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatc 232  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  53024788 aaattttgggtcacgcattttcaaatatctccttataaactacatttgaagtggtgttaatacaatc 53024854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 149 - 217
Target Start/End: Original strand, 53972476 - 53972544
Alignment:
Q  149 gtatttaagggcatacaaaatattgggtcacacattttcaaatatctccttataaactacatttgaagt 217  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||| ||||||||    
T  53972476 gtatttaagggcatacgaaatattgggtcacacattttcgaatatctctttataaactacgtttgaagt 53972544  T

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Target: chr3; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 173 - 223
Target Start/End: Original strand, 33648248 - 33648298
Alignment:
Q  173 gggtcacacattttcaaatatctccttataaactacatttgaagtggtgtt 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33648248 gggtcacacattttcaaatatctccttataaactacatttgaagtggtgtt 33648298  T

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Target: chr3; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 53352053 - 53352119
Alignment:
Q  166 aaatattgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatc 232  Q
    |||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  53352053 aaattttggatcacatattttcaaatatctccttataaactacatttgaagtggtgttaatacaatc 53352119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 24124720 - 24124785
Alignment:
Q  162 tacaaaatattgggtcacacattttcaaatatctccttat-aaactacatttgaagtggtgttgat 226  Q
    |||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||    
T  24124720 tacaaaatattgggtcacacattttcgaatatttccttataaaactacatttgaagtggtgttgat 24124785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 50835577 - 50835518
Alignment:
Q  176 tcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatcccc 235  Q
    |||||||||||  || | ||| ||||| ||||||||| ||||||||||||||||||||||    
T  50835577 tcacacattttggaacacctctttatatactacatttcaagtggtgttgatacaatcccc 50835518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 50840276 - 50840335
Alignment:
Q  176 tcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatcccc 235  Q
    |||||||||||  || | ||| ||||| ||||||||| ||||||||||||||||||||||    
T  50840276 tcacacattttggaacacctctttatatactacatttcaagtggtgttgatacaatcccc 50840335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 234
Target Start/End: Original strand, 47761408 - 47761438
Alignment:
Q  204 actacatttgaagtggtgttgatacaatccc 234  Q
    |||||||||||||||||||||||||||||||    
T  47761408 actacatttgaagtggtgttgatacaatccc 47761438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 149 - 235
Target Start/End: Original strand, 43070259 - 43070345
Alignment:
Q  149 gtatttaagggcatacaaaatattgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatcccc 235  Q
    ||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  43070259 gtatttaagagaatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaatcccc 43070345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 26906644 - 26906727
Alignment:
Q  149 gtatttaagggcatacaaaatattgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatc 232  Q
    ||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  26906644 gtatttaagggcatataaaatattgagtcacacattttcgaatatctccttataaactacatttgaaatggtgttgatacaatc 26906727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 149 - 235
Target Start/End: Complemental strand, 14232123 - 14232037
Alignment:
Q  149 gtatttaagggcatacaaaatattgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatcccc 235  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  | |||||||||||    
T  14232123 gtatttaagggcgtacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtccttatacaatcccc 14232037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 1264846 - 1264762
Alignment:
Q  149 gtatttaagggcatacaaaatattgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatcc 233  Q
    |||||||||| | |||||||||||||||||||||||||| ||||| | ||||||| ||||||||||||||||| | |||||||||    
T  1264846 gtatttaaggtcttacaaaatattgggtcacacattttcgaatattttcttataagctacatttgaagtggtgctaatacaatcc 1264762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 149 - 233
Target Start/End: Original strand, 48847092 - 48847176
Alignment:
Q  149 gtatttaagggcatacaaaatattgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatcc 233  Q
    |||||||||| | |||||||||||||||||||||||||| ||||  | ||||||||||||||||||||||||| | |||||||||    
T  48847092 gtatttaaggccctacaaaatattgggtcacacattttcgaatactttcttataaactacatttgaagtggtgctaatacaatcc 48847176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 11646835 - 11646891
Alignment:
Q  176 tcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatc 232  Q
    ||||||||||| ||||||||| ||||| ||||||||||||||||| |||||||||||    
T  11646835 tcacacattttgaaatatctctttatacactacatttgaagtggttttgatacaatc 11646891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 13764863 - 13764807
Alignment:
Q  176 tcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatc 232  Q
    |||||||||||  ||||| || ||||| |||||||||||||||||||||||| ||||    
T  13764863 tcacacattttggaatatatctttatacactacatttgaagtggtgttgatataatc 13764807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 149 - 235
Target Start/End: Complemental strand, 37195 - 37109
Alignment:
Q  149 gtatttaagggcatacaaaatattgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatcccc 235  Q
    |||||||  |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||    
T  37195 gtatttagaggcatacaaaatattgggtcacacattttcgaatatttccttataaactacatttgaagtggtgctgatacaatcccc 37109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 149 - 235
Target Start/End: Complemental strand, 8164042 - 8163957
Alignment:
Q  149 gtatttaagggcatacaaaatattgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatcccc 235  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||    
T  8164042 gtatttaagggcatacaaa-tattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatataatcccc 8163957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 149 - 235
Target Start/End: Original strand, 14672450 - 14672536
Alignment:
Q  149 gtatttaagggcatacaaaatattgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatcccc 235  Q
    |||||||  |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||    
T  14672450 gtatttagaggcatacaaaatattgggtcacacattttcgaatatttccttataaactacatttgaagtggtgctgatacaatcccc 14672536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 149 - 233
Target Start/End: Original strand, 27535377 - 27535462
Alignment:
Q  149 gtatttaagggcatacaaaatattgggtcacacattttcaaatatctccttataaac-tacatttgaagtggtgttgatacaatcc 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||| |||||||||||    
T  27535377 gtatttaagggcatacaaaatattgggtcacacattttcaaatatctccttgtaaacataaatttgaagtggtgctgatacaatcc 27535462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 42312378 - 42312300
Alignment:
Q  3 gacaaactgggggtgttcattcattgaagcgggaaaacaacnnnnnnntaaaaggtgactttctatgatgtagatgaaa 81  Q
    |||||||||||||||||||||||||||||| |||||| |||       |||||||||||||||| ||||||||||||||    
T  42312378 gacaaactgggggtgttcattcattgaagcaggaaaagaacaaaaatataaaaggtgactttctctgatgtagatgaaa 42312300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 1848851 - 1848910
Alignment:
Q  176 tcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatcccc 235  Q
    ||||||||||| ||| |||||||| || |||| ||||||||||||||| ||||| |||||    
T  1848851 tcacacattttgaaaaatctccttgtacactatatttgaagtggtgttaatacagtcccc 1848910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 11730447 - 11730388
Alignment:
Q  176 tcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatcccc 235  Q
    |||||||||||  || | ||| ||||| ||||||||| ||||||||||||||||||||||    
T  11730447 tcacacattttggaacacctctttatatactacatttcaagtggtgttgatacaatcccc 11730388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 23740759 - 23740700
Alignment:
Q  176 tcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatcccc 235  Q
    |||||||||||  || | ||| ||||| ||||||||| ||||||||||||||||||||||    
T  23740759 tcacacattttggaacacctctttatatactacatttcaagtggtgttgatacaatcccc 23740700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 149 - 235
Target Start/End: Original strand, 21999241 - 21999327
Alignment:
Q  149 gtatttaagggcatacaaaatattgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatcccc 235  Q
    ||||||||||||||||||||||||||||| ||||||||  ||||| ||||||||||||||||||||||||||| |||||||||||||    
T  21999241 gtatttaagggcatacaaaatattgggtcgcacatttttgaatatttccttataaactacatttgaagtggtgctgatacaatcccc 21999327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 150 - 235
Target Start/End: Original strand, 31891360 - 31891445
Alignment:
Q  150 tatttaagggcatacaaaatattgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatcccc 235  Q
    |||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||  |||||||||||||    
T  31891360 tatttaagggcatataaaatattgggtcacacattttcgaatatttccttataaactatatttgaagtggtactgatacaatcccc 31891445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 20909266 - 20909199
Alignment:
Q  1 tagacaaactgggggtgttcattcattgaagcgggaaaacaacnnnnnnntaaaaggtgactttctat 68  Q
    |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  20909266 tagacaaactgggggtgttcattcattgaagcgggaaaacaacaaaaatataaaaggtgactttctat 20909199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 20923714 - 20923647
Alignment:
Q  1 tagacaaactgggggtgttcattcattgaagcgggaaaacaacnnnnnnntaaaaggtgactttctat 68  Q
    |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  20923714 tagacaaactgggggtgttcattcattgaagcgggaaaacaacaaaaatataaaaggtgactttctat 20923647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 27447140 - 27447091
Alignment:
Q  176 tcacacattttcaaatatctccttataaactacatttgaagtggtgttga 225  Q
    ||||||||||| ||||||||| ||||| ||||||||| ||||||||||||    
T  27447140 tcacacattttgaaatatctctttatacactacatttaaagtggtgttga 27447091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 22681881 - 22681837
Alignment:
Q  178 acacattttcaaatatctccttataaactacatttgaagtggtgt 222  Q
    |||||||||| |||||||| ||||| |||||||||||||||||||    
T  22681881 acacattttcgaatatctctttatacactacatttgaagtggtgt 22681837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 25169747 - 25169690
Alignment:
Q  178 acacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatcccc 235  Q
    ||||||||| ||| | ||||||||| ||||||||||||||||||  ||| ||||||||    
T  25169747 acacattttgaaaaacctccttatagactacatttgaagtggtgccgatgcaatcccc 25169690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 149 - 235
Target Start/End: Original strand, 29861344 - 29861430
Alignment:
Q  149 gtatttaagggcatacaaaatattgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatcccc 235  Q
    |||||||  |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||    
T  29861344 gtatttagaggcatacaaaatattgggtcacacattttcgaatatttccttataaactacatttgaagtggtgctgatacaatcccc 29861430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 24262669 - 24262617
Alignment:
Q  180 acattttcaaatatctccttataaactacatttgaagtggtgttgatacaatc 232  Q
    |||||||  |||||||| ||||| |||||||||||||||||||||||||||||    
T  24262669 acattttggaatatctctttatatactacatttgaagtggtgttgatacaatc 24262617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 17404859 - 17404905
Alignment:
Q  176 tcacacattttcaaatatctccttataaactacatttgaagtggtgt 222  Q
    |||||||||||| |||||||| ||||| || ||||||||||||||||    
T  17404859 tcacacattttcgaatatctctttatacacaacatttgaagtggtgt 17404905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 149 - 235
Target Start/End: Complemental strand, 25226893 - 25226807
Alignment:
Q  149 gtatttaagggcatacaaaatattgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatcccc 235  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||  | |||||||||||    
T  25226893 gtatttaagggcatacaaaatattgggtcacacattttcgaatatctccttataaattacatttgaagtggtccttatacaatcccc 25226807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 41326164 - 41326084
Alignment:
Q  1 tagacaaactgggggtgttcattcattgaagcgggaaaacaacnnnnnnntaaaaggtgactttctatgatgtagatgaaa 81  Q
    |||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  41326164 tagacaaactgggggtgttcattcattgaagcgggaaaacaacaaaaaaataaaaggtgactttctatgatgtagatgaaa 41326084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 47247043 - 47247113
Alignment:
Q  11 gggggtgttcattcattgaagcgggaaaacaacnnnnnnntaaaaggtgactttctatgatgtagatgaaa 81  Q
    |||||||||||||||||||||| ||||||||||       |||||||||||||||||||||||||||||||    
T  47247043 gggggtgttcattcattgaagcaggaaaacaacaaaaatataaaaggtgactttctatgatgtagatgaaa 47247113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 32437583 - 32437629
Alignment:
Q  176 tcacacattttcaaatatctccttataaactacatttgaagtggtgt 222  Q
    |||||||||||| |||||||| ||||| |||||||||||||||||||    
T  32437583 tcacacattttcgaatatctctttatacactacatttgaagtggtgt 32437629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 149 - 233
Target Start/End: Original strand, 10192 - 10275
Alignment:
Q  149 gtatttaagggcatacaaaatattgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatcc 233  Q
    |||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||    
T  10192 gtatttaagggcgtacaaa-tattgggtcacacattttcgaatatctccttataaactacatttgaggtggtgctgatacaatcc 10275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 149 - 217
Target Start/End: Complemental strand, 1584 - 1516
Alignment:
Q  149 gtatttaagggcatacaaaatattgggtcacacattttcaaatatctccttataaactacatttgaagt 217  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||    
T  1584 gtatttaagggcatacaaaatattgggtcacacattttcgaatatctctttataaactacgtttgaagt 1516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 40218 - 40267
Alignment:
Q  176 tcacacattttcaaatatctccttataaactacatttgaagtggtgttga 225  Q
    ||||||||||| ||||||||| ||||| ||||||||| ||||||||||||    
T  40218 tcacacattttgaaatatctctttatacactacatttaaagtggtgttga 40267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 33590 - 33646
Alignment:
Q  176 tcacacattttcaaatatctccttataaactacatttgaagtggtgttgatacaatc 232  Q
    |||||||||||  |||||| | ||||| |||||||||||||||||||||||| ||||    
T  33590 tcacacattttggaatatcactttatatactacatttgaagtggtgttgatataatc 33646  T

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