View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11714_low_47 (Length: 244)
Name: NF11714_low_47
Description: NF11714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11714_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 42687408 - 42687172
Alignment:
| Q |
1 |
atcactttgttacgtttgttactaaaaattgaactaacctttccttgttggatatcgacctgtccttcccctgcgagggtaaggatgtgtgctagaccct |
100 |
Q |
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| T |
42687408 |
atcactttgttacgtttgttactaaaaattgaactaacctttccttgttggatatcgacctgtccttcccctgcgagggtaaggatgtgtgctagaccct |
42687309 |
T |
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| Q |
101 |
ccaagaacagggcgagcaagactttcaccgtgatctggatttcctaaatcattgtagacatcgtaatcgtagatcctttcatgtaacttgcgctctcctg |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42687308 |
ccaagaacagggcgagcaaaactttcaccgtgatctggattgcctaaatcattgtagacatcgtaatcgtagatcctttcatgtaacttgcgctctcctg |
42687209 |
T |
|
| Q |
201 |
ttccatctccccttaaattttgcaattcttcttctct |
237 |
Q |
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| T |
42687208 |
ttccatctccccttaaattttgcaattcttcttctct |
42687172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 65 - 237
Target Start/End: Original strand, 42694313 - 42694485
Alignment:
| Q |
65 |
cttcccctgcgagggtaaggatgtgtgctagaccctccaagaacagggcgagcaagactttcaccgtgatctggatttcctaaatcattgtagacatcgt |
164 |
Q |
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| T |
42694313 |
cttccccgacgaggataaggatatgtgtcagacccgccaagaacaggacgagcatgattgtcacctttctccggatttcctaaatcattgtagacatcat |
42694412 |
T |
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| Q |
165 |
aatcgtagatcctttcatgtaacttgcgctctcctgttccatctccccttaaattttgcaattcttcttctct |
237 |
Q |
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| T |
42694413 |
aatcatagattctttcccattctttgcgttctcctgttccatctcctcttaaattgttcaattcttcttctct |
42694485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 233
Target Start/End: Original strand, 6290507 - 6290597
Alignment:
| Q |
143 |
cctaaatcattgtagacatcgtaatcgtagatcctttcatgtaacttgcgctctcctgttccatctccccttaaattttgcaattcttctt |
233 |
Q |
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| T |
6290507 |
cctaaatcattgtagacatcgtaatcatatattctttcccattccttgcgctctcctgttccatctcctcttaaagtcttcaattcttctt |
6290597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 6425292 - 6425363
Alignment:
| Q |
146 |
aaatcattgtagacatcgtaatcgtagatcctttcatgtaacttgcgctctcctgttccatctccccttaaa |
217 |
Q |
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| T |
6425292 |
aaatcattgtagacatcgtaatcatagatcctttcccattccttgcgctctccttttccatctcctcttaaa |
6425363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 233
Target Start/End: Original strand, 6353602 - 6353689
Alignment:
| Q |
146 |
aaatcattgtagacatcgtaatcgtagatcctttcatgtaacttgcgctctcctgttccatctccccttaaattttgcaattcttctt |
233 |
Q |
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| T |
6353602 |
aaatcattgtagacatcgtaatcatatattctttcccattccttgcgctctccagttccatctcctcttaaagtcttcaattcttctt |
6353689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 237
Target Start/End: Original strand, 6322622 - 6322710
Alignment:
| Q |
149 |
tcattgtagacatcgtaatcgtagatcctttcatgtaacttgcgctctcctgttccatctccccttaaattttgcaattcttcttctct |
237 |
Q |
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| T |
6322622 |
tcattgtaaacatcgtagtcatagattctatcgtgttccttgcgctgacccgttccatctcctcttaaagtcttcaattcttcttctct |
6322710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 9603247 - 9603196
Alignment:
| Q |
69 |
ccctgcgagggtaaggatgtgtgctagaccctccaagaacagggcgagcaag |
120 |
Q |
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|||| |||||||||||||| ||||||||||||||||| || || |||||||| |
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| T |
9603247 |
cccttcgagggtaaggatgagtgctagaccctccaaggaccggacgagcaag |
9603196 |
T |
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