View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11714_low_48 (Length: 244)
Name: NF11714_low_48
Description: NF11714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11714_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 41923660 - 41923894
Alignment:
| Q |
1 |
gatttgctttggtgtggcacctatagaacagaagcnnnnnnncacattaagcatctattca-atttgcagttaattacattaacaacatgaacacataac |
99 |
Q |
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| T |
41923660 |
gatttgctttggtgtggcacctatagaacagaagcaaaaaaacacaataaacatctaatcctatttgcggttaattacattaacaacatgaatacataat |
41923759 |
T |
|
| Q |
100 |
aatcagaactt-gatgtatatattaagatacttacaatctgcaccaccaagctgctgaagcgccttcaagaatcgcttgtgcaactcctgcgaccagcac |
198 |
Q |
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||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
41923760 |
aatcagaactttgatgtatatattaagatactcacaatctgcaccaccaagctgctgaagcgccttcaggaatcgcttgtgcaactcctgcgaccagcac |
41923859 |
T |
|
| Q |
199 |
cgtcgctgctttctcttttcctctttctcatctct |
233 |
Q |
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|||||||| |||||||||||||||||||||||||| |
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| T |
41923860 |
cgtcgctgttttctcttttcctctttctcatctct |
41923894 |
T |
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