View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11714_low_49 (Length: 243)
Name: NF11714_low_49
Description: NF11714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11714_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 15 - 227
Target Start/End: Complemental strand, 55928763 - 55928550
Alignment:
| Q |
15 |
ggtttgttggcaaaatcaacaagaggtttagggaagttgagagtcaatggcctcaacctagttccaaacccccc-aactagaatcaaagccttcatcgtg |
113 |
Q |
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| T |
55928763 |
ggtttgttggcaaaatcaacaagaggtttagggaagttgagagtcaatggcctcaacctagttccaaacccccccaactagaatcaaagccttcatcgtg |
55928664 |
T |
|
| Q |
114 |
ataagccttttgatttcttgtgagattataaaattagaaacaggtcaagataagccaagaggatgtaatctgatatatgagcagatagattccaccaaat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55928663 |
ataagccttttgatttcttgtgagattataaaattagaaacaggtcaagataagccaagaggatgtaatctgatatatgagcagatagattccaccaaat |
55928564 |
T |
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| Q |
214 |
cctatcctatatat |
227 |
Q |
| |
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|||||||||||||| |
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| T |
55928563 |
cctatcctatatat |
55928550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 15 - 218
Target Start/End: Complemental strand, 34584729 - 34584526
Alignment:
| Q |
15 |
ggtttgttggcaaaatcaacaagaggtttagggaagttgagagtcaatggcctcaacctagttccaaaccccccaactagaatcaaagccttcatcgtga |
114 |
Q |
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|||||||| ||||||||||||||||| ||||| | |||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||| |
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| T |
34584729 |
ggtttgttagcaaaatcaacaagaggcttaggaacactgagtgtcaatggcctcaacctagttccaaaccccccaaccagaatcaatgccttcattgtga |
34584630 |
T |
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| Q |
115 |
taagccttttgatttcttgtgagattataaaattagaaacaggtcaagataagccaagaggatgtaatctgatatatgagcagatagattccaccaaatc |
214 |
Q |
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| T |
34584629 |
taagtcctttgttttcctgagagattataaaattagaagcagatcaagataagccaagaaaatgtaatctgaaatatgagcagatagattccaccaaatc |
34584530 |
T |
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| Q |
215 |
ctat |
218 |
Q |
| |
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|||| |
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| T |
34584529 |
ctat |
34584526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 30920316 - 30920225
Alignment:
| Q |
18 |
ttgttggcaaaatcaacaagaggtttagggaagttgagagtcaatggcctcaacctagttccaaaccccccaactagaatcaaagccttcat |
109 |
Q |
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||||| ||||||||||||||||| || || | | || ||||||||||||||||| ||||||||||| ||||| |||||||| |||||||| |
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| T |
30920316 |
ttgttagcaaaatcaacaagaggcttgggaacactaagtgtcaatggcctcaaccttgttccaaaccctccaaccagaatcaatgccttcat |
30920225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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