View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11714_low_52 (Length: 240)

Name: NF11714_low_52
Description: NF11714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11714_low_52
NF11714_low_52
[»] chr3 (1 HSPs)
chr3 (1-227)||(22203536-22203761)
[»] chr5 (2 HSPs)
chr5 (15-47)||(6715868-6715900)
chr5 (9-45)||(39594922-39594958)
[»] chr4 (1 HSPs)
chr4 (9-46)||(17822783-17822820)
[»] chr2 (1 HSPs)
chr2 (9-46)||(27317494-27317531)
[»] chr8 (1 HSPs)
chr8 (9-45)||(2606164-2606200)
[»] chr7 (1 HSPs)
chr7 (9-45)||(33266405-33266441)
[»] chr1 (1 HSPs)
chr1 (14-46)||(28043737-28043769)


Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 22203536 - 22203761
Alignment:
Q  1 caaaattaatgtcggtagataagctcgaataagttaatccaaacagtaatggnnnnnnnatgtttgaacacaatcacaattgaggtctctttggtcgtat 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||| |||    
T  22203536 caaaattaatgtcggtagataagctcgaatatgttaatccaaacagtaatggtttttt-atgtttgaacacaatcacaattgaggtctctttggtcttat 22203634  T
Q  101 ttcattgtgtttctacgcaacattaaggatcatgctgcaaccacaatcgttatcaaaaaccactatttaagaccttgcataggtttttaatgttatttat 200  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22203635 ttcattgtgtttctccgcaatattaaggatcatgctgcaaccacaatcgttatcaaaaaccactatttaagaccttgcataggtttttaatgttatttat 22203734  T
Q  201 ttatggaaaacccaatgtgcctagtga 227  Q
    |||||||||||||||||||||||||||    
T  22203735 ttatggaaaacccaatgtgcctagtga 22203761  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 6715900 - 6715868
Alignment:
Q  15 gtagataagctcgaataagttaatccaaacagt 47  Q
    |||||||||||||||||||||||||||||||||    
T  6715900 gtagataagctcgaataagttaatccaaacagt 6715868  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 39594922 - 39594958
Alignment:
Q  9 atgtcggtagataagctcgaataagttaatccaaaca 45  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  39594922 atgtcggtagataagctcaaataagtcaatccaaaca 39594958  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 17822820 - 17822783
Alignment:
Q  9 atgtcggtagataagctcgaataagttaatccaaacag 46  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  17822820 atgtcagtagataagctcaaataagttaatccaaacag 17822783  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 27317494 - 27317531
Alignment:
Q  9 atgtcggtagataagctcgaataagttaatccaaacag 46  Q
    |||||||||||||||||| ||||||| |||||||||||    
T  27317494 atgtcggtagataagctcaaataagtcaatccaaacag 27317531  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 2606164 - 2606200
Alignment:
Q  9 atgtcggtagataagctcgaataagttaatccaaaca 45  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  2606164 atgtcagtagataagctcgaataagtcaatccaaaca 2606200  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 33266441 - 33266405
Alignment:
Q  9 atgtcggtagataagctcgaataagttaatccaaaca 45  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  33266441 atgtcggtagataagctcaaataagtcaatccaaaca 33266405  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 28043737 - 28043769
Alignment:
Q  14 ggtagataagctcgaataagttaatccaaacag 46  Q
    ||||||||| |||||||||||||||||||||||    
T  28043737 ggtagataaactcgaataagttaatccaaacag 28043769  T

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