View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11714_low_53 (Length: 240)
Name: NF11714_low_53
Description: NF11714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11714_low_53 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 14304845 - 14305055
Alignment:
| Q |
12 |
atgaagaacaggcataaggactcaaagttctatcgattgaaatcgatggatatgttgctactacatcggatattcttatcacatgaatacctgatgaccc |
111 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14304845 |
atgaagaatgggcataaggactcaaagttctatcgattgaaatcgatggatatgtggctactacatcggatattcttatcacatgaatacctgatgaccc |
14304944 |
T |
|
| Q |
112 |
ttttattgatatgacaaaaaagaacacagataatggaagattaaccaatgagaatatgtcatctattctcaaactaagctccaacttttcttcacggaca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14304945 |
ttttattgatatgacaaaaaagaacacagataatggaagattaaccaatgagaatatgtcatctattctcaaactaagctccaacttttcttcacggaca |
14305044 |
T |
|
| Q |
212 |
gttatcaatcg |
222 |
Q |
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||||||||||| |
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| T |
14305045 |
gttatcaatcg |
14305055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 14283088 - 14283274
Alignment:
| Q |
13 |
tgaagaacaggcataaggactcaaagttctatcgattgaaatcgatggatatgttgctactacatcggatattcttatcacatgaatacctgatgaccct |
112 |
Q |
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|||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14283088 |
tgaagaacaggcataaggactcaaagttctatcggtggaaactgatggatatgttgctactacatcggatattcttatcacatgaatacctgatgaccct |
14283187 |
T |
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| Q |
113 |
tttattgatatgacaaaaaagaacacagataatggaagattaaccaatgagaatatgtcatctattctcaaactaagctccaacttt |
199 |
Q |
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| T |
14283188 |
tttattgatatgacaaaaaagaacacagataatggaagattaaccaaagagaatatgtcatctattctcaaattaagctccaacttt |
14283274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 14321236 - 14321446
Alignment:
| Q |
12 |
atgaagaacaggcataaggactcaaagttctatcgattgaaatcgatggatatgttgctactacatcggatattcttatcacatgaatacctgatgaccc |
111 |
Q |
| |
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|||| ||||| |||||||||||||||||||||||| | ||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14321236 |
atgacgaacaagcataaggactcaaagttctatcggtcgaaattgaccgatatgttgctactacatcggatattcttatcacgtgaatacctgatgaccc |
14321335 |
T |
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| Q |
112 |
ttttattgatatgacaaaaaagaacacagataatggaagattaaccaatgagaatatgtcatctattctcaaactaagctccaacttttcttcacggaca |
211 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
14321336 |
ttttacggatatcacaaaaaagaacacagataatggaagattaaccaatgagaatatatcatctattttcaaactaagctccaacttttcttcaccgaca |
14321435 |
T |
|
| Q |
212 |
gttatcaatcg |
222 |
Q |
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||||||||||| |
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| T |
14321436 |
gttatcaatcg |
14321446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 12 - 198
Target Start/End: Original strand, 25885918 - 25886104
Alignment:
| Q |
12 |
atgaagaacaggcataaggactcaaagttctatcgattgaaatcgatggatatgttgctactacatcggatattcttatcacatgaatacctgatgaccc |
111 |
Q |
| |
|
||||||||| ||||||||||||||| ||| ||| ||| || ||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25885918 |
atgaagaaccagcataaggactcaaatttccatcagttggaaccgatgtatatgtcgctactacatcggatattcttatcacatgaatccctgatgaccc |
25886017 |
T |
|
| Q |
112 |
ttttattgatatgacaaaaaagaacacagataatggaagattaaccaatgagaatatgtcatctattctcaaactaagctccaactt |
198 |
Q |
| |
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| | || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
25886018 |
tctaatggatatgacaaaaaagaacaaagataatggaagattaaccaatgagaatatgtcatctattctcaaactaagttccaactt |
25886104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 12 - 194
Target Start/End: Original strand, 44349762 - 44349944
Alignment:
| Q |
12 |
atgaagaacaggcataaggactcaaagttctatcgattgaaatcgatggatatgttgctactacatcggatattcttatcacatgaatacctgatgaccc |
111 |
Q |
| |
|
||||||||| ||||||||||||||| ||| ||| | | || |||| |||||| ||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
44349762 |
atgaagaaccagcataaggactcaaatttccatcagtcggaactgatgtatatgtcgctactacatcggatattcttatcacaagaatccctgatgaccc |
44349861 |
T |
|
| Q |
112 |
ttttattgatatgacaaaaaagaacacagataatggaagattaaccaatgagaatatgtcatctattctcaaactaagctcca |
194 |
Q |
| |
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| | || |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
44349862 |
tctaatggatatgacaaaaaagaacgcagataatggaagattaaccaatgagaatatatcatctattctcaaactaagttcca |
44349944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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