View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11714_low_54 (Length: 239)
Name: NF11714_low_54
Description: NF11714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11714_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 8755451 - 8755675
Alignment:
| Q |
1 |
taatcttccatcttgtgtaagatcttgttgtggattttttataaggcatgctttgtttagaaacctaccaatcaaatcataaacctaagccaattagcca |
100 |
Q |
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| T |
8755451 |
taatcttccatcttgtgtaagatcttgttgtggattttttataaggcatgctttgtttagaaacctaccaatcaaatcataaacctaagccaattagcca |
8755550 |
T |
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| Q |
101 |
tcacatatatcatcactctcaaaacaagatcaaataatgagttgattatacaatttaataatttaattgatgtgcaccgggaatgtaaagattgtttaca |
200 |
Q |
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| T |
8755551 |
tcacatatatcatcactctcaaaacaagatcaaataatgagttgattatacaatttaataatttaattgatgtgcaccgggaatgtaaagattgtttaca |
8755650 |
T |
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| Q |
201 |
gcgtcaaccaatgataaactatttg |
225 |
Q |
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| T |
8755651 |
gcgtcaaccaatgataaactatttg |
8755675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 8748108 - 8748256
Alignment:
| Q |
1 |
taatcttccatcttgtgtaagatcttgttgtggattttttataaggcatgctttgtttagaaacctaccaatcaaatcataaacctaagccaattagcca |
100 |
Q |
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| T |
8748108 |
taatcttctatcttgtgtaagatcttgttcttgatgttttataaggcatgctttatttagaaaccttgcaatcaaagtagataccaaagccaattag-aa |
8748206 |
T |
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| Q |
101 |
tcacatatatcatcactctcaaaacaagatcaaataatgagttgattatacaatt |
155 |
Q |
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| T |
8748207 |
tcacatatatcatcactctcaaaacagg-----ataatgagttgattatacaatt |
8748256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 8766014 - 8766065
Alignment:
| Q |
28 |
ttgtggattttttataaggcatgctttgtttagaaacctaccaatcaaatca |
79 |
Q |
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| T |
8766014 |
ttgtggattttttataaggcatgctttgtttagaaacctttcaatcaaatca |
8766065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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