View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11714_low_59 (Length: 204)
Name: NF11714_low_59
Description: NF11714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11714_low_59 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 44703775 - 44703978
Alignment:
| Q |
1 |
gagtagtggatccaactccccttcgtgagggacactccaaagattagtaggttaaattaaattaaacaaaacccagagtaatttattcttctgtagtagg |
100 |
Q |
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| T |
44703775 |
gagtagtggatccaactccccttcgtgagggacactccaaagattagtaggttaaattaaattaaacaaaacccagagtaatttattcttctgtagtagg |
44703874 |
T |
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| Q |
101 |
gtgtaccgtaggctccgcagttgcatcatcaccaattgaaccatcaccgttgatttgatcaaggacgagaacgaatcccatagcaaaggcagcgtcaaaa |
200 |
Q |
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| T |
44703875 |
gtgtaccgtaggctccgcagttgcatcatcaccaattgaaccatcaccgttgatttgatcaaggacgagaacgaatcccatagcaaaggcagcgtcaaaa |
44703974 |
T |
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| Q |
201 |
ccag |
204 |
Q |
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|||| |
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| T |
44703975 |
ccag |
44703978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 87 - 204
Target Start/End: Original strand, 44714564 - 44714681
Alignment:
| Q |
87 |
tcttctgtagtagggtgtaccgtaggctccgcagttgcatcatcaccaattgaaccatcaccgttgatttgatcaaggacgagaacgaatcccatagcaa |
186 |
Q |
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| T |
44714564 |
tcttctgtggtaggatgcacagaagactccgcagttgcatcatcatcaagggaatcatcaccgctgatatgatcaaggacgagaataaatcccattgcaa |
44714663 |
T |
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| Q |
187 |
aggcagcgtcaaaaccag |
204 |
Q |
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| T |
44714664 |
aagcagcatcaaaaccag |
44714681 |
T |
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