View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11714_low_7 (Length: 595)
Name: NF11714_low_7
Description: NF11714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11714_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 241 - 587
Target Start/End: Original strand, 13848047 - 13848393
Alignment:
| Q |
241 |
gtccctgttgttgaaccaaagtggagccttttattcctaaaactgatcctaatacaatacagaatccaataaagtcgtgttaatgcaccaaaagaaccag |
340 |
Q |
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| T |
13848047 |
gtccctgttgttgaaccaaagtggagccttttattcctaaaactgatcctaatacaatacagaatccaataaagtcgtgttaatgcaccaaaagaatcag |
13848146 |
T |
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| Q |
341 |
ttctgttcttgattgctcaggagaagtagagacaattgtaagtgaaaagtttgaatccacatatcgaagaggaagagggtttccaatgcaacttttaatt |
440 |
Q |
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| T |
13848147 |
ttttgttcttgaatgctcaggagaagtagagacaattgtaagggaaaagtttgaatcctcacatcaaagaggaagagggtttccaatgcaacttttaatt |
13848246 |
T |
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| Q |
441 |
tcacaagaataagggaacatgaaagtagaagatggaggaattgagtgttttaagaagatgtaaggttttgttttcccaaaaaatatgactggctagtgta |
540 |
Q |
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| T |
13848247 |
tcacaagaataagggaacatgacagtagaagatggaggaattgagtgtttgaagaagatgtaaggttttgttttcccaaaaaatatgactggctagtgta |
13848346 |
T |
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| Q |
541 |
ggtcatttcttgaggttcactcatggtccctttaatttgatgtccat |
587 |
Q |
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| T |
13848347 |
ggtcatttgttgaggttcactcatggtccctttaatttgaggtccat |
13848393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 13847891 - 13848034
Alignment:
| Q |
19 |
cattaaaaaattactaattaaaatctagtgtttgaaataaaattggagcttgaaaaaccattaaagataagcttgaacagcccacacaaacaaaatcaaa |
118 |
Q |
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| T |
13847891 |
cattaaaaaattactaattaaaatctagtgtttgaaataaaattggagcttgaaaaaccattagagataagcttgaacag-ccacacaaacaaaatcaaa |
13847989 |
T |
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| Q |
119 |
tttttgttctttccacaatattaggttggttttatgagagtcact |
163 |
Q |
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| T |
13847990 |
tttttgttctttccacaatattaggttggttttatgagagtcact |
13848034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 377 - 580
Target Start/End: Original strand, 34343782 - 34343982
Alignment:
| Q |
377 |
tgtaagtgaaaagtttgaatccacatatcgaagaggaagagggtttccaatgcaacttttaatttcacaagaataagggaacatgaaagtagaagatgga |
476 |
Q |
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| T |
34343782 |
tgtaagtgaaaagtttgaatcctcacatcaaagaggaagagggtttccaatgcaacttttaatttcacaagaataagggaacatgacagtagaagatgga |
34343881 |
T |
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| Q |
477 |
ggaattgagtgttttaagaagatgtaaggttttgttttcccaaaaaatatgactggctagtgtaggtcatttcttgaggttcactcatggtccctttaat |
576 |
Q |
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| T |
34343882 |
ggaattgagtgtttgaagaagatgtaaggttttgttttcccaaaaaatatgact---tagtgtaggtcatttgttgaggttcactcatggtccctttaat |
34343978 |
T |
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| Q |
577 |
ttga |
580 |
Q |
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|||| |
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| T |
34343979 |
ttga |
34343982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 19 - 157
Target Start/End: Original strand, 34343647 - 34343781
Alignment:
| Q |
19 |
cattaaaaaattactaattaaaatctagtgtttgaaataaaattggagcttgaaaaaccattaaagataagcttgaacagcccacacaaacaaaatcaaa |
118 |
Q |
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| T |
34343647 |
cattaaaaaattact---taaaatctagtgtttgaaataaaattggagcttgaaaaaccattagagataagcttgaacag-ccacacaaacaaaatcaaa |
34343742 |
T |
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| Q |
119 |
tttttgttctttccacaatattaggttggttttatgaga |
157 |
Q |
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| T |
34343743 |
tttttgttctttccacaatattaggttggttttatgaga |
34343781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 505 - 578
Target Start/End: Original strand, 34823081 - 34823153
Alignment:
| Q |
505 |
gttttgttttcccaaaaaatatgactggctagtgtaggtcatttcttgaggttcactcatggtccctttaattt |
578 |
Q |
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| T |
34823081 |
gtttttttttcctaaaagatatgaccggctagagcaggtcatttgttgaggttcactcatgat-cctttaattt |
34823153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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