View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11714_low_8 (Length: 554)

Name: NF11714_low_8
Description: NF11714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11714_low_8
NF11714_low_8
[»] chr4 (2 HSPs)
chr4 (19-544)||(21834442-21834975)
chr4 (426-467)||(1600295-1600336)
[»] chr5 (1 HSPs)
chr5 (169-336)||(28524863-28525035)
[»] chr6 (10 HSPs)
chr6 (149-297)||(14800791-14800940)
chr6 (417-544)||(19632275-19632402)
chr6 (425-544)||(6594742-6594861)
chr6 (429-538)||(7994324-7994433)
chr6 (417-538)||(6589465-6589586)
chr6 (417-541)||(10579876-10580000)
chr6 (417-544)||(6394700-6394827)
chr6 (417-544)||(14820529-14820656)
chr6 (417-502)||(6423053-6423138)
chr6 (422-458)||(6597120-6597156)
[»] chr3 (2 HSPs)
chr3 (292-334)||(46926701-46926743)
chr3 (358-387)||(51764737-51764766)
[»] chr7 (2 HSPs)
chr7 (417-537)||(15092294-15092414)
chr7 (358-387)||(10614398-10614427)


Alignment Details
Target: chr4 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 19 - 544
Target Start/End: Complemental strand, 21834975 - 21834442
Alignment:
Q  19 agataagattcataaactacaaaagatggtgtctagcaatcgttcactgagagggtttgaagggcatggtcttgcacagctgaatgatgtttaaggttaa 118  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21834975 agatgagattcataaactacaaaagatggtgtctagcaatcgttcactgagagggtttgaagggcatggtcttgcacagctgaatgatgtttaaggttaa 21834876  T
Q  119 tttgaagggcgttgaattcgtgtagtagcgtttgaatttaaaatgatggatgaagtaatgtttgagagtacaacaaaggtggaagcggcgttttgagtac 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21834875 tttgaagggcgttgaattcgtgtagtagcgtttgaatttaaaatgatggatgaagtaatgtttgagagtacagcaaaggtggaagcggcgttttgagtac 21834776  T
Q  219 aaaaatggtggaggtggtatttgagagtacaacgatggt--------aaaaataaaac-taaaactatgtacacacacatttaacaacacgacattcaac 309  Q
    |||||||||||||||| |||||| ||||||||||||||         ||||| ||||| |||||||||| ||||||||||||||||||||||||||||||    
T  21834775 aaaaatggtggaggtgctatttgggagtacaacgatggataaaaaaaaaaaaaaaaacataaaactatgaacacacacatttaacaacacgacattcaac 21834676  T
Q  310 cgcttgcattacattgtacattatatatactttggaaattatcaagcaatgagtaaatgcacatttgtaagttgacataaaatcttaaaacaaaaactac 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  21834675 cgcttgcattacattgtacattatatatactttggaaattatcaagcaatgagtaaatgcacatttgtaagttgacataaaatcttaaaacaaaaac-ac 21834577  T
Q  410 ttacaggatactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgt 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||    
T  21834576 ttacaggatactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtcacttaaatgcaaatcccccaaattaatttctctcagttgtgt 21834477  T
Q  510 acatttttctaccatatgtttcactcccttctctg 544  Q
    |||| |||||||||||||||||| |||||||||||    
T  21834476 acatctttctaccatatgtttcattcccttctctg 21834442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 467
Target Start/End: Original strand, 1600295 - 1600336
Alignment:
Q  426 aagaaggcatccacgacgcgagaagaatttcctcttttcgtc 467  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||    
T  1600295 aagaaggcatccatgactcgagaagaatttcctattttcgtc 1600336  T

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Target: chr5 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 169 - 336
Target Start/End: Original strand, 28524863 - 28525035
Alignment:
Q  169 tgaagtaatgtttgagagtacaacaaaggtggaagcggcgtttt-gagtacaaaaatggtggaggtggtatttgagagtacaacgatggtaaaaataaaa 267  Q
    |||||||| |||| |||||||||| | |||||| || || |||  || |||||| |||||||||||||  |||||| ||||||||||||||||||||| |    
T  28524863 tgaagtaacgtttcagagtacaacgatggtggaggcagcatttgagaatacaaagatggtggaggtggcgtttgagggtacaacgatggtaaaaataata 28524962  T
Q  268 ctaaaactatgt----acacacacatttaacaacacgacattcaaccgcttgcattacattgtacattatata 336  Q
     |||||||||||    | ||||||||||||||| ||  || ||||| ||||||||| ||||| ||||||||||    
T  28524963 gtaaaactatgtccacatacacacatttaacaaaacttcactcaactgcttgcattgcattgcacattatata 28525035  T

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Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 149 - 297
Target Start/End: Original strand, 14800791 - 14800940
Alignment:
Q  149 tttgaatttaaaatgatggatgaagtaatgtttgagagtacaacaaaggtggaagcggcgtttt-gagtacaaaaatggtggaggtggtatttgagagta 247  Q
    ||||||| || || ||||| |||||||| ||||||||| |||| || |||||| | | | |||  ||||||||| |||||||||||||  |||||| |||    
T  14800791 tttgaatgtacaacgatggttgaagtaacgtttgagagcacaataatggtggaggagacatttgagagtacaaagatggtggaggtggagtttgagggta 14800890  T
Q  248 caacgatggtaaaaataaaactaaaactatgtacacacacatttaacaac 297  Q
    ||| |  ||||| ||| |||||||  ||||||||||||||||||||||||    
T  14800891 caatggcggtaacaatgaaactaatgctatgtacacacacatttaacaac 14800940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 417 - 544
Target Start/End: Original strand, 19632275 - 19632402
Alignment:
Q  417 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttt 516  Q
    |||||||||||||||||||||| ||||| || ||| ||||||  ||| ||| ||| |||| | ||||||||||| ||| ||  ||||| || | || |||    
T  19632275 atactagcaaagaaggcatccatgacgcaagcagagtttcctagttttgtcacttgaatgaatatcccccaaataaatctccttcagttgtttgcagttt 19632374  T
Q  517 tctaccatatgtttcactcccttctctg 544  Q
    |||||||  |||||||||||||||||||    
T  19632375 tctaccacgtgtttcactcccttctctg 19632402  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 425 - 544
Target Start/End: Complemental strand, 6594861 - 6594742
Alignment:
Q  425 aaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttttctaccat 524  Q
    ||||||||||||| ||||||||||||| || |||  ||||||| ||||||||  || ||| |||||  |||||||||| | |||| || ||||||||||     
T  6594861 aaagaaggcatccccgacgcgagaagagttccctaatttcgtcacttaaatgacaacccctcaaatacatttctctcaattgtgtgcagttttctaccac 6594762  T
Q  525 atgtttcactcccttctctg 544  Q
    ||||||  |||||| |||||    
T  6594761 atgtttggctccctcctctg 6594742  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 429 - 538
Target Start/End: Complemental strand, 7994433 - 7994324
Alignment:
Q  429 aaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttttctaccatatgt 528  Q
    |||||||||  |||||||||||| || ||| |||| ||| |||| ||| |||||||| |||| ||| ||| ||||| | || || |||||||||| ||||    
T  7994433 aaggcatccgtgacgcgagaagagttccctatttttgtcacttatatgaaaatcccctaaataaatctctttcagttgcgtgcagttttctaccacatgt 7994334  T
Q  529 ttcactccct 538  Q
    ||||||||||    
T  7994333 ttcactccct 7994324  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 417 - 538
Target Start/End: Complemental strand, 6589586 - 6589465
Alignment:
Q  417 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttt 516  Q
    ||||||| ||||| |||||||| || | ||||||| || |||  ||| ||| |||||||| | |||||||| || ||| |||   |||||||| || |||    
T  6589586 atactagtaaagatggcatccatgatgggagaagatttccctagttttgtcacttaaatgaatatcccccagataaatctcttgaagtcgtgtgcagttt 6589487  T
Q  517 tctaccatatgtttcactccct 538  Q
    ||||||| ||||||||||||||    
T  6589486 tctaccacatgtttcactccct 6589465  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 417 - 541
Target Start/End: Complemental strand, 10580000 - 10579876
Alignment:
Q  417 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttt-tcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacattt 515  Q
    |||||||||||||||||||||| ||||| ||||||||  ||| ||| || || |||||||  |||||  |||| | ||| ||||| ||| |||| || ||    
T  10580000 atactagcaaagaaggcatccatgacgcaagaagaatcccctatttatcctc-cttaaatctaaatcatccaagtaaatctctctaagttgtgtgcagtt 10579902  T
Q  516 ttctaccatatgtttcactcccttct 541  Q
    |||||||| |||||| ||||||||||    
T  10579901 ttctaccacatgtttaactcccttct 10579876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 544
Target Start/End: Original strand, 6394700 - 6394827
Alignment:
Q  417 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttt 516  Q
    ||||||||||| | |||||||||||||| | |  | || ||| |||||||| |||| ||  | ||||||||||| ||| ||||||| | |||| || |||    
T  6394700 atactagcaaatacggcatccacgacgcaatagaagttccctattttcgtcacttacatcaatatcccccaaattaatctctctcaattgtgtgcagttt 6394799  T
Q  517 tctaccatatgtttcactcccttctctg 544  Q
    ||||||| ||||| ||| ||||| ||||    
T  6394800 tctaccacatgttccacacccttttctg 6394827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 544
Target Start/End: Original strand, 14820529 - 14820656
Alignment:
Q  417 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttt 516  Q
    ||||||||||||| | |||||||||||||| | || ||||||  ||| |   |||||||| ||  || |||||| ||| ||||||||  |||| || |||    
T  14820529 atactagcaaagatgacatccacgacgcgatatgagtttcctaattttgagacttaaatgaaaccccgccaaattaatctctctcagctgtgtgcagttt 14820628  T
Q  517 tctaccatatgtttcactcccttctctg 544  Q
    | ||||| ||||||||| ||||||||||    
T  14820629 tttaccacatgtttcacacccttctctg 14820656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 502
Target Start/End: Original strand, 6423053 - 6423138
Alignment:
Q  417 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctca 502  Q
    |||||||||||||||||||||||||  | ||| || |||| | |||| ||| |||| ||| ||||| ||||||| ||| |||||||    
T  6423053 atactagcaaagaaggcatccacgatccaagatgagtttcttatttttgtcacttacatgaaaatctcccaaataaatctctctca 6423138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 422 - 458
Target Start/End: Complemental strand, 6597156 - 6597120
Alignment:
Q  422 agcaaagaaggcatccacgacgcgagaagaatttcct 458  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  6597156 agcaaagaaggcatccatgacgcaagaagaatttcct 6597120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 292 - 334
Target Start/End: Original strand, 46926701 - 46926743
Alignment:
Q  292 aacaacacgacattcaaccgcttgcattacattgtacattata 334  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  46926701 aacaacacgacattcaaccgcttgcattacattgtacattata 46926743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 387
Target Start/End: Complemental strand, 51764766 - 51764737
Alignment:
Q  358 atgagtaaatgcacatttgtaagttgacat 387  Q
    ||||||||||||||||||||||||||||||    
T  51764766 atgagtaaatgcacatttgtaagttgacat 51764737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 417 - 537
Target Start/End: Complemental strand, 15092414 - 15092294
Alignment:
Q  417 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttt 516  Q
    ||||||||||| | ||||||||||||||||||| | ||||||  ||| ||| |||| ||| | || || ||||| ||| ||||||| | |||| || |||    
T  15092414 atactagcaaatatggcatccacgacgcgagaatagtttcctagttttgtcacttacatggatataccgcaaattaatctctctcaattgtgtgcagttt 15092315  T
Q  517 tctaccatatgtttcactccc 537  Q
    |||| || |||||||||||||    
T  15092314 tctagcacatgtttcactccc 15092294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 387
Target Start/End: Original strand, 10614398 - 10614427
Alignment:
Q  358 atgagtaaatgcacatttgtaagttgacat 387  Q
    ||||||||||||||||||||||||||||||    
T  10614398 atgagtaaatgcacatttgtaagttgacat 10614427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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