View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11715_high_1 (Length: 581)
Name: NF11715_high_1
Description: NF11715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11715_high_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 122; Significance: 3e-62; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 60 - 190
Target Start/End: Complemental strand, 32241592 - 32241460
Alignment:
| Q |
60 |
caattataaaccaccactct--ctcttttaatttcttcacttcatgatctctatgatcttcatcattttataagcttcaaataaataagttatcatcaac |
157 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32241592 |
caattataaaccaccactctttctcttttaatttcttcacttcatgatctctatgatcttcatcattttataagcttcaaataaataagttatcatcaac |
32241493 |
T |
|
| Q |
158 |
aatatttctctctttgtgatttattttttctct |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
32241492 |
aatatttctctctttgtgatttattttttctct |
32241460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 478 - 576
Target Start/End: Complemental strand, 32241167 - 32241069
Alignment:
| Q |
478 |
atgtcacaactcttttttaattaatgattaagtttcttattgtgtgatcatgcttcataactaaacacgttttgattttatcttcttgtctctgcttct |
576 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||| |
|
|
| T |
32241167 |
atgtcacaactcttttttaattaatgattaagtttcttattgtgtgatcatgcttcataactaaacacgttttgtttttatcttcttgtttctgtttct |
32241069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 219 - 296
Target Start/End: Complemental strand, 32241428 - 32241351
Alignment:
| Q |
219 |
ttaagggtattcatcaaagagcttgcaattcaatctatgatattggattaacatatatattaaggtacttgctcttcc |
296 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32241428 |
ttaagggtgttcatcaatgagcttgcaattcaatctatgatattggattaacatatatattaaggtacttgctcttcc |
32241351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 336 - 414
Target Start/End: Complemental strand, 32241313 - 32241233
Alignment:
| Q |
336 |
cataaactcatata--tataatatcttcattcttagcattcgaccatgtttattatcatcttatgagtatgaattctctcc |
414 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
32241313 |
cataaactcatatatatataatatcttcattcttagcattcgaccatgtttcttatcatcttatgagaatgaattctctcc |
32241233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University