View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11715_high_8 (Length: 321)
Name: NF11715_high_8
Description: NF11715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11715_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 16 - 319
Target Start/End: Original strand, 10014774 - 10015077
Alignment:
| Q |
16 |
attacatcacacatgatcagttcacaaactcattctcttcagtttcttgttacatgtcaggaactagcacagtaggtataatgacctgaaacctggtgca |
115 |
Q |
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| T |
10014774 |
attacatcacacatgatcagtttacaaactcattctcttcagtttcttgttacatgtcaggaactagcacagtaggtataatgacctgaaacctggtgca |
10014873 |
T |
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| Q |
116 |
actcagttggagtgttcccacattcatatcattttacataattagcatcacatcaatcgtagtagaaattttcagaatttatgctggcattgaagtatag |
215 |
Q |
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| T |
10014874 |
actcagttggagtgttcccacattcatatcattttacataattagcatcacatcaatcatagtagaaattttcagaatttatgctggcattgaagtatag |
10014973 |
T |
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| Q |
216 |
gtttgtcttgatcatagatatcacaataaatagctatgaagttcatgaaacttggaacaaggtcagatactttctctacagcacaatctaccaggtattc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||| |
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| T |
10014974 |
gtttgtcttgatcatagatatcacaataaatagctatgaagttcatgaaacttggaacaaggtcagatactttctatacagaacaagctaccaggtattc |
10015073 |
T |
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| Q |
316 |
attt |
319 |
Q |
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|||| |
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| T |
10015074 |
attt |
10015077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 316
Target Start/End: Original strand, 56184937 - 56185002
Alignment:
| Q |
251 |
atgaagttcatgaaacttggaacaaggtcagatactttctctacagcacaatctaccaggtattca |
316 |
Q |
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| T |
56184937 |
atgaagttcatgaaacttgggacaaggccagatactttctacactgaacaagctaccaggtattca |
56185002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 316
Target Start/End: Original strand, 31191665 - 31191730
Alignment:
| Q |
251 |
atgaagttcatgaaacttggaacaaggtcagatactttctctacagcacaatctaccaggtattca |
316 |
Q |
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| T |
31191665 |
atgaagttcatgaaacttgggacaaagccagatactttctacactgaacaagctaccaggtattca |
31191730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 8530565 - 8530510
Alignment:
| Q |
111 |
gtgcaactcagttggagtgttcccacattcatatcattttacataattagcatcac |
166 |
Q |
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| T |
8530565 |
gtgcaacccagttggagtgttcccacattcacatcgttttacttaattagcttcac |
8530510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 317
Target Start/End: Complemental strand, 16808205 - 16808139
Alignment:
| Q |
251 |
atgaagttcatgaaacttggaacaaggtcagatactttctctacagcacaatctaccaggtattcat |
317 |
Q |
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|||||||||||||||||||| |||| | |||||||||||| || | |||| ||||||||||||||| |
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| T |
16808205 |
atgaagttcatgaaacttgggacaaagccagatactttctagactgaacaagctaccaggtattcat |
16808139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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