View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11715_high_9 (Length: 302)

Name: NF11715_high_9
Description: NF11715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11715_high_9
NF11715_high_9
[»] chr3 (1 HSPs)
chr3 (1-291)||(55054037-55054327)


Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 55054037 - 55054327
Alignment:
Q  1 atacaaatttaaaacgcctttgtcagtgttcctttactatcattgttcatcgattgtgtgtgtgtttttaattttaacatggttttgatgtatatgtcag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55054037 atacaaatttaaaacgcctttgtcagtgttcctttactatcattgttcatcgattgtgtgtgtgtttttaattttaacatggttttgatgtatatgtcag 55054136  T
Q  101 ttcctttaagaactcagttttaatttccacatttgaatcaatcattattcagaataagtcaaaagggaatgccgtcaaaaacaaagatggtggtgataaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55054137 ttcctttaagaactcagttttaatttccacatttgaatcaatcattattcagaataagtcaaaagggaatgccgtcaaaaacaaagatggtggtgataaa 55054236  T
Q  201 tgtgttcagtctgatgacaatggttcttgtgcggttacatctgagttggaaaacaaagacgatggtgacaaacaccatcagtctgatgatg 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55054237 tgtgttcagtctgatgacaatggttcttgtgcggttacatctgagttggaaaacaaagacgatggtgacaaacaccatcagtctgatgatg 55054327  T

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